Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030433

Physical Location & Seq

Genomic Coordinates Forward (+)

37028377 .. 37031318

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATGGTGACAAGAAGCAAGAGTTCAGGCCTATTAAAGTTAGTGGAGGAGAGGTTATTGAAGAGGAAAACAGAGGAAGAGAAAGAGCAAGCACAAATTTCATATATCCCGAAGGACTGTATCTCAAACATCCTTGCACGACTTCCTGCTGACTCTCTTCAAAGGTCGAGGTTTGTTTGCAAACCATGGTATAATGCAGTTAAAAACCCCAAATTCATTCATGCTCATCTCCAACTTTCTGAATCTGTTTTGAAATGTAAAGGAAAGTTTGCACCCTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

94

Amino Acids

10.91

Weight (kDa)

9.75

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	34 - 73	1e-09	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0030433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218791
rosa_roxburghii	Rroxscaffold_3G00232880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	96, 212
AgsI	TTSAA	3 cut(s)	61, 161, 253
AoxI	GGCC	1 cut(s)	28
ApoI	RAATTY	2 cut(s)	96, 212
AsuHPI	GGTGA	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	185
BspANI	GGCC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	3 cut(s)	56, 72, 162
BstC8I	GCNNGC	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	90
CviAII	CATG	2 cut(s)	186, 221
CviJI	RGCY	1 cut(s)	30
CviKI_1	RGCY	1 cut(s)	30
Eam1104I	CTCTTC	3 cut(s)	56, 72, 162
EarI	CTCTTC	3 cut(s)	56, 72, 162
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	189, 224
FaiI	YATR	5 cut(s)	103, 105, 187, 192, 222
FatI	CATG	2 cut(s)	185, 220
FokI	GGATG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	189, 224
HinfI	GANTC	2 cut(s)	152, 242
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	137, 180, 197, 272
Hsp92II	CATG	2 cut(s)	189, 224
LpnPI	CCDG	2 cut(s)	12, 159
MaeIII	GTNAC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	73, 89, 149
MluCI	AATT	2 cut(s)	96, 212
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	40, 45, 57, 67, 162
MseI	TTAA	2 cut(s)	35, 201
NcoI	CCATGG	1 cut(s)	185
NlaIII	CATG	2 cut(s)	189, 224
NmuCI	GTSAC	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	35, 201
SchI	GAGTC	1 cut(s)	146
SetI	ASST	3 cut(s)	56, 167, 173
Sse9I	AATT	2 cut(s)	96, 212
SseBI	AGGCCT	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	96, 212
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	35, 201
Tru9I	TTAA	2 cut(s)	35, 201
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	90, 205, 209
XapI	RAATTY	2 cut(s)	96, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.