Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0030433

Physical Location & Seq

Genomic Coordinates Reverse (-)

18601217 .. 18607309

Gene Structure 6093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGACAAGCAGCAAGAGTCCAGGCCTATTAAAGTTAGTGGAGGAGAGGTTATTGATGAAGAAAATAGAGGAGGAGAGGTTATTGATGAAGAAAATAGAGGAGGAGAAAAAGCTAGCACAGAAGATTTCATACATGCCCAAGGGCTGTATCTCAAACATCCTTGCACGACTTCCTGTTGACTCTATTCAAAGGTCAAGGTTTGTTTGCAAAAAATGGTATGATGTAGTTAGAGACCCCAAATTCATCGATGCTCATCTCCAAAGTTCTGAATCTGACAATAACTTTGAAAAAGAGGAGAAGATTGGAATAGAGGAGGGAAAGCTTTGCACTTCTCGCTTAATTGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

118

Amino Acids

13.61

Weight (kDa)

8.97

Isoelectric Point (pI)

74.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	44 - 82	5.9e-09	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218791
rosa_roxburghii	Rroxscaffold_3G00232880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	191, 290
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	115, 325
AluI	AGCT	2 cut(s)	115, 325
Alw26I	GTCTC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbvI	GCAGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	241
BmtI	GCTAGC	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 65, 95
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	255
BseRI	GAGGAG	7 cut(s)	59, 86, 89, 116, 119, 311, 329
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	249
BspOI	GCTAGC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	4 cut(s)	27, 115, 147, 325
CviKI_1	RGCY	4 cut(s)	27, 115, 147, 325
Eco130I	CCWWGG	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	133, 137, 222
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	3 cut(s)	19, 182, 272
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	271, 277
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	167, 210, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	139
LpnPI	CCDG	3 cut(s)	9, 36, 189
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	4 cut(s)	73, 103, 136, 313
MluCI	AATT	2 cut(s)	242, 342
MlyI	GAGTC	2 cut(s)	28, 176
MseI	TTAA	2 cut(s)	32, 341
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	2 cut(s)	27, 176
PpsI	GAGTC	2 cut(s)	27, 176
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	32, 341
SatI	GCNGC	1 cut(s)	13
SchI	GAGTC	2 cut(s)	28, 176
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	6 cut(s)	53, 83, 117, 197, 203, 327
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	242, 342
SseBI	AGGCCT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	141
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	242, 342
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	32, 341
Tru9I	TTAA	2 cut(s)	32, 341
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	74, 104, 120, 235
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.