Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025155

Physical Location & Seq

Genomic Coordinates Forward (+)

38646786 .. 38646986

Gene Structure 201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGAGGTATCAGAAGTTAGACGTACAATGAGGCAACCGAATATCAAGAAGGCACCAGGCTGTAGCTGGACTGAGTTGAAGGATGATGTGCATGCTTTTATCAATGGTGATTGGGTCCATCCTAAAACCAACTTTATTTATGCTGAATTGGACTCCTTGACAGCTCGACTTCGTGAGCATGGATATGTGCCCCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

66

Amino Acids

7.7

Weight (kDa)

6.82

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	2 - 25	9.9e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0025155)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219911
rosa_samantha	Rh4BG067700 Rh4CG075600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	66, 164, 196
AluI	AGCT	3 cut(s)	66, 164, 196
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	52
BccI	CCATC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	54, 116
BmrFI	CCNGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	88, 118
BseMII	CTCAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	54, 116
BspT107I	GGYRCC	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	88, 118
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	88, 118
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	2 cut(s)	92, 179
CviJI	RGCY	4 cut(s)	60, 66, 164, 196
CviKI_1	RGCY	4 cut(s)	60, 66, 164, 196
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	95, 182
FaiI	YATR	4 cut(s)	93, 141, 180, 186
FatI	CATG	2 cut(s)	91, 178
FokI	GGATG	2 cut(s)	95, 105
FspBI	CTAG	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	95, 182
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	46, 173
HpyAV	CCTTC	2 cut(s)	43, 73
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	95, 182
LpnPI	CCDG	3 cut(s)	42, 52, 69
MaeI	CTAG	1 cut(s)	199
MaeII	ACGT	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NlaIII	CATG	2 cut(s)	95, 182
NlaIV	GGNNCC	2 cut(s)	54, 116
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	54, 116
PspPI	GGNCC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	9, 25, 68, 166, 198
SfcI	CTRYAG	1 cut(s)	61
SgeI	CNNG	9 cut(s)	58, 68, 69, 79, 104, 169, 177, 185, 191
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	183
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	55
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	115
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XspI	CTAG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.