Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030507

Physical Location & Seq

Genomic Coordinates Forward (+)

44535993 .. 44537085

Gene Structure 1093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAAGCTTACGCTTAAGATTGACTTATGCCACCATGATATACAGATACCTGTTAAGGCACCAGACAAAACCCCTGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGTGTCTCAAGAGGTGATAAAGGAAACCTGTTCATTTTGAAATTGGTTGATCCATCCTATCGAGTTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

61

Amino Acids

6.97

Weight (kDa)

6.04

Isoelectric Point (pI)

26.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	15 - 51	3.9e-11	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0030507)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0222931
rosa_multiflora	Rmu_sc0006514.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	89, 137
BanI	GGYRCC	1 cut(s)	58
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	121
BfrI	CTTAAG	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	106, 164
BseNI	ACTGG	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	106, 164
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	106, 164
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	1 cut(s)	7
CviKI_1	RGCY	1 cut(s)	7
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	38
FaiI	YATR	4 cut(s)	28, 36, 41, 94
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	34
FokI	GGATG	2 cut(s)	113, 151
Hin1II	CATG	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	5
HphI	GGTGA	2 cut(s)	89, 137
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	6 cut(s)	60, 63, 68, 75, 87, 152
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	2 cut(s)	87, 152
MnlI	CCTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	15, 54
MspCI	CTTAAG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	15, 54
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	4 cut(s)	9, 52, 127, 141
SgeI	CNNG	9 cut(s)	47, 62, 74, 86, 87, 95, 125, 132, 151
SmlI	CTYRAG	2 cut(s)	14, 118
SmoI	CTYRAG	2 cut(s)	14, 118
Sse9I	AATT	2 cut(s)	87, 152
StyD4I	CCNGG	1 cut(s)	73
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	87, 152
Tru1I	TTAA	2 cut(s)	15, 54
Tru9I	TTAA	2 cut(s)	15, 54
TspDTI	ATGAA	3 cut(s)	17, 117, 133
Vha464I	CTTAAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.