Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006514.1

Orthogroup ID

OG0030507

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1138

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 193 bp

atatcttatgaagcttacgcttaagattgacttatgccaccatgatgtacagatacctgttaaggcaccagacaaaacccctggtgaactggaaattacatatttggatgaagagttgcgtgtctcaagaggtgataaaggaaacctgttcatcttgaaattggttgatccatcctatcgagttcctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

63

Amino Acids

7.23

Weight (kDa)

6.08

Isoelectric Point (pI)

25.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030507)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0222931
rosa_multiflora	Rmu_sc0006514.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	96, 144
BanI	GGYRCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	113, 171
BseNI	ACTGG	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	113, 171
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	113, 171
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	1 cut(s)	14
CviKI_1	RGCY	1 cut(s)	14
CviQI	GTAC	1 cut(s)	48
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	45
FaiI	YATR	4 cut(s)	9, 35, 43, 101
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	1 cut(s)	41
FokI	GGATG	2 cut(s)	120, 158
Hin1II	CATG	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	2 cut(s)	96, 144
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	127, 155
Hpy8I	GTNNAC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	67, 70, 75, 82, 94, 159
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	123
MluCI	AATT	2 cut(s)	94, 159
MnlI	CCTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	22, 61
MslI	CAYNNNNRTG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	22, 61
Sau3AI	GATC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	4 cut(s)	16, 59, 134, 148
SmiMI	CAYNNNNRTG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	21, 125
SmoI	CTYRAG	2 cut(s)	21, 125
Sse9I	AATT	2 cut(s)	94, 159
StyD4I	CCNGG	1 cut(s)	80
TaqI	TCGA	1 cut(s)	179
TasI	AATT	2 cut(s)	94, 159
TatI	WGTACW	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	22, 61
Tru9I	TTAA	2 cut(s)	22, 61
TspDTI	ATGAA	3 cut(s)	24, 124, 140
Vha464I	CTTAAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.