RchiOBHm_Chr7g0226541

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0025105
Physical Location & Seq
Forward (+)
49813233 .. 49813505
273 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGGGAATTGATCACTACAAAATACTTGGAGTGAATCGCAACGCGAGCCCAGATGTGGTGAAGAAAGCATATAAGAAACTGGTCATGTTTTGGCACCCTGACAAACACTTGCAGGAAGAAGCTCGAGCCAAGGTCGACGCCAAGTTCAAGGAAATCAACCAGGCTTACCAGATTCTCAACGACCCTGTGAAACAACATAACTACGATAGTCAGCATGCAAATATAGCCAACTCCAATTGGACGTACGACATCGTCAGTTTGGTTTCCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C

Protein Analysis

90

Amino Acids

10.42

Weight (kDa)

8.86

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 4 - 69 9.9e-23 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025105)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226541
rosa_multiflora Rmu_sc0001423.1_g000018
rosa_samantha Rh7BG372300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 123
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 1 cut(s) 10
BfaI CTAG 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 123
BsiWI CGTACG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 10
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 46, 216
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 45, 224
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 159
BstUI CGCG 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 46, 216
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 85, 215
CviJI RGCY 5 cut(s) 48, 122, 128, 164, 227
CviKI_1 RGCY 5 cut(s) 48, 122, 128, 164, 227
CviQI GTAC 1 cut(s) 244
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 88, 218
FaiI YATR 6 cut(s) 70, 72, 86, 198, 216, 224
FatI CATG 2 cut(s) 84, 214
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 50
FspBI CTAG 1 cut(s) 271
HgaI GACGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 88, 218
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 34, 172
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 112, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 224
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 88, 218
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 63, 65, 98, 111, 146, 173, 182, 198
MaeI CTAG 1 cut(s) 271
MaeII ACGT 1 cut(s) 242
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 73, 128
MfeI CAATTG 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 2 cut(s) 6, 235
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 45, 224
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 88, 218
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 123
PfeI GAWTC 2 cut(s) 34, 172
Pfl23II CGTACG 1 cut(s) 243
PflFI GACNNNGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspLI CGTACG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 95
PspXI VCTCGAGB 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 251
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 124, 135, 245
Sfr274I CTCGAG 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
SphI GCATGC 1 cut(s) 218
Sse9I AATT 2 cut(s) 6, 235
SspMI CTAG 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 129
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 124, 135
TasI AATT 2 cut(s) 6, 235
TfiI GAWTC 2 cut(s) 34, 172
Tth111I GACNNNGTC 1 cut(s) 251
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.