RchiOBHm_Chr7g0229901
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019961
Physical Location & Seq
Forward (+)
53394551 .. 53395165
615 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGGTTGCAGGTATTCTGATTTATATGATGGGTGGAAGTTCGATTGATGATGACTGGGAGCTTCCCTTTTCTAATGCTGCTCGCACTGTGATCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCCACAGGCAACAGCATTCTTGGCAAAAAATCCTTCAGTTCCAAGCGTAGCTCTAGTGGTGTCATGAGCAATTGTGAATTGAAGACTGCTATCTTGAGAGATGGACAAGAAGTTAATGTCCTGGTCTTTTTGAATATTCTGCCAGATCAGACTTTATTGGCAAAGAAATTGTCAAATGCATTAGTTTGGCTAAGGATGGGATCCAATCATCCATGCTGTTCTAGTGGACTTGTGGTTTTCTCAACTAGACCTCGCTTTTCACAAGAAGAGGAGTCTGCAATCCTTAGCTTGCAAGCTCTATTTGGCAGTAAAATCTTTGACTATATGATTGTTGTCTTTACGGGAGGGGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

159

Amino Acids

17.15

Weight (kDa)

7.7

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 28 - 159 2.4e-31 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019961)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0229631 RchiOBHm_Chr7g0229901 RchiOBHm_Chr7g0230011
rosa_multiflora Rmu_sc0002666.1_g000016 Rmu_sc0002738.1_g000002
rosa_samantha Rh7DG403700
rosa_wichuraiana Rw7G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 318, 331
AcuI CTGAAG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 205, 256
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 4 cut(s) 61, 174, 411, 419
AluI AGCT 4 cut(s) 61, 174, 411, 419
AlwI GGATC 2 cut(s) 318, 331
ApeKI GCWGC 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
BamHI GGATCC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 64
BccI CCATC 3 cut(s) 22, 218, 313
BciT130I CCWGG 1 cut(s) 245
BfaI CTAG 3 cut(s) 177, 345, 369
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 212
Bpu10I CCTNAGC 2 cut(s) 314, 407
BpuEI CTTGAG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 59, 112
BseBI CCWGG 1 cut(s) 245
BseGI GGATG 3 cut(s) 324, 331, 478
BseNI ACTGG 2 cut(s) 59, 112
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 90, 268, 323
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 318, 331
BsrI ACTGG 2 cut(s) 59, 112
BssMI GATC 3 cut(s) 90, 268, 323
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 82, 413, 417
BstDEI CTNAG 3 cut(s) 94, 314, 407
BstF5I GGATG 3 cut(s) 324, 331, 478
BstKTI GATC 3 cut(s) 93, 271, 326
BstMBI GATC 3 cut(s) 90, 268, 323
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BtsCI GGATG 3 cut(s) 324, 331, 478
BtsIMutI CAGTG 2 cut(s) 84, 105
Cac8I GCNNGC 3 cut(s) 82, 413, 417
CciI TCATGA 1 cut(s) 186
CseI GACGC 1 cut(s) 111
CviAII CATG 2 cut(s) 187, 336
CviJI RGCY 5 cut(s) 61, 174, 313, 411, 419
CviKI_1 RGCY 5 cut(s) 61, 174, 313, 411, 419
DdeI CTNAG 3 cut(s) 94, 314, 407
DpnI GATC 3 cut(s) 92, 270, 325
DpnII GATC 3 cut(s) 90, 268, 323
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 2 cut(s) 190, 339
FaiI YATR 6 cut(s) 24, 26, 188, 337, 447, 449
FatI CATG 2 cut(s) 186, 335
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 318, 331
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 3 cut(s) 177, 345, 369
GluI GCNGC 1 cut(s) 78
HgaI GACGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 190, 339
HinfI GANTC 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 18, 273
Hpy188III TCNNGA 2 cut(s) 187, 217
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 4 cut(s) 8, 302, 401, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 3 cut(s) 94, 314, 407
Hsp92II CATG 2 cut(s) 190, 339
Kzo9I GATC 3 cut(s) 90, 268, 323
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 40, 93, 114, 230, 257, 279
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 3 cut(s) 177, 345, 369
MalI GATC 3 cut(s) 92, 270, 325
MboI GATC 3 cut(s) 90, 268, 323
MboII GAAGA 2 cut(s) 217, 401
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 1 cut(s) 323
MluCI AATT 3 cut(s) 193, 200, 290
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 384, 385, 461
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 3 cut(s) 90, 268, 323
NlaIII CATG 2 cut(s) 190, 339
NlaIV GGNNCC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 304
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 323
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 90, 268, 323
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 245
SetI ASST 6 cut(s) 13, 63, 176, 376, 413, 421
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 3 cut(s) 193, 200, 290
SspI AATATT 1 cut(s) 259
SspMI CTAG 3 cut(s) 177, 345, 369
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 193, 200, 290
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 91, 112
TseI GCWGC 1 cut(s) 77
TspRI CASTG 2 cut(s) 91, 112
XspI CTAG 3 cut(s) 177, 345, 369
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.