RchiOBHm_Chr7g0230231

elongation factor 1-gamma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
53654967 .. 53658490
3524 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGTCTGTAGATGTCATTCCGTGGCTGTGTGCTGAGGCAAAAGCTTTCAAGCTCAGTAATGTTGGGTTGGTGTTGCATGATTGGAAGACCAATAAAAATGGTTGCAAGGCACGTATTGCTGCCAAGTACAGTGGTGTGAACCTTGAATTGGTGAAGAATTTTGAGATGGGGATGTCCAATAAGACTGCCAATTTTCTCAAATTGACCCCCTATTGGGAAGGTTCCTTTGTTAGAAACACCTGTTGGTCCTGTTTTCGAGAGCAATGCCATTTTACTAGCTTGAAGGCAAATAATACTCTGTTTGGTTCTTCCTTATTTGAACATCCTTTGTGGAGCAATGGATAG

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

9.08

Isoelectric Point (pI)

18.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025132)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0230231
rosa_samantha Rh7AG409700 Rh7BG389100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 3 cut(s) 148, 213, 214
AgsI TTSAA 4 cut(s) 49, 146, 283, 320
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 226, 258
AluBI AGCT 3 cut(s) 44, 52, 279
AluI AGCT 3 cut(s) 44, 52, 279
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 92
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 246, 280
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 213, 214
Bse3DI GCAATG 2 cut(s) 269, 343
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 177, 322
BseLI CCNNNNNNNGG 3 cut(s) 148, 213, 214
BseMI GCAATG 2 cut(s) 269, 343
BseMII CTCAG 2 cut(s) 24, 67
BseXI GCAGC 1 cut(s) 106
BslI CCNNNNNNNGG 3 cut(s) 148, 213, 214
BspCNI CTCAG 2 cut(s) 25, 66
BspLI GGNNCC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 269, 343
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 33, 53
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 177, 322
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 177, 322
BtsIMutI CAGTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 127
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 25, 44, 52, 279
CviKI_1 RGCY 4 cut(s) 25, 44, 52, 279
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 33, 53
Eco47I GGWCC 1 cut(s) 246
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 184, 309
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 276
GluI GCNGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 42
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 212, 277
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 76, 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 33, 53
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 80
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 2 cut(s) 253, 262
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 112
MboII GAAGA 3 cut(s) 97, 166, 300
MluCI AATT 4 cut(s) 146, 157, 190, 200
MnlI CCTC 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 246
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 246
SetI ASST 7 cut(s) 46, 54, 115, 144, 223, 242, 281
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 246
Sse9I AATT 4 cut(s) 146, 157, 190, 200
SspMI CTAG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 256
TasI AATT 4 cut(s) 146, 157, 190, 200
TatI WGTACW 1 cut(s) 126
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.