Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0028661

Physical Location & Seq

Genomic Coordinates Forward (+)

59709188 .. 59712620

Gene Structure 3433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGCTTCCCCCGTCAAGTTCCTCTTCGGTTTCTTGATCCTCTGCATCACATTGTGGTTGCTCTTCATATTTGCTTCAAGGTTTATAGCTTGGATTTTAAGCCGTGTATTAGGAGCATCTGTCAAATTTCGGGTCGCTGGATGGGTATTTGTCAGGGATGTTGTGGTGAAGTTTAAAAAGGGCCCTGTTGAATCTATTTCCATTGGGGAAATTAAACCCAGCATACGTCGGTCCTTGGTCAAACTAGGGGTTGGTTTTATTTCTAAAGATCCCAAGTTGCAAGTGGTAATATCTGACTTGGAAGTTGTAATGAGGTCTTCAAATAAGAGTACACCAAAGGCAAAGGCAAAGGCCAAGTCTGGATCTCGAAAATCCCGCAATTCAGGCCGTGGAAAGTGGATGGTAGGGGCCAATATTGCACGATATTTATCTGTTTCCATCACAGACTTGGTTTTGAAGACGCCAAAAATTTCCATTGAAGTAAAGGAATTGAAAGTGGACATATCTAAAGATGGTACATCCAAGCAAAATCTTATTGTCAAGCTACAGATATTACCTATTGTTGTTCAAAGGAATGAACCACGGGCCAGTTGTGACCAGTCATCCAGTTTTTGCACCGGAGAATCCCTTTCTGTAAGCCAGTCATCATCTGCTTTGGTGGACAGGTCATCTACTCTTTTTGTCTGTGAAGAATTTTTGCTCTCGTGTGAATTTGGTCATGATAGGTATTATCCATTAGCAAAATATGTTTATTCGTATGATACAAATCTCAAGCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

261

Amino Acids

29.03

Weight (kDa)

9.91

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hobbit	PF10344	4 - 241	8.2e-41	Hobbit/FMP27/BTLP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028661)

Species	Orthologous Gene IDs
malus_domestica	MD08G1202500.v1.1
rosa_chinensis	RchiOBHm_Chr7g0235031

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 379
AclWI	GGATC	3 cut(s)	34, 266, 373
AcsI	RAATTY	4 cut(s)	128, 471, 695, 713
AcyI	GRCGYC	1 cut(s)	464
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	334, 520
AgsI	TTSAA	7 cut(s)	81, 194, 324, 460, 482, 496, 572
AluBI	AGCT	2 cut(s)	92, 547
AluI	AGCT	2 cut(s)	92, 547
AlwI	GGATC	3 cut(s)	34, 266, 373
AoxI	GGCC	5 cut(s)	184, 354, 388, 411, 588
ApaI	GGGCCC	1 cut(s)	188
ApoI	RAATTY	4 cut(s)	128, 471, 695, 713
ArsI	GACNNNNNNTTYG	4 cut(s)	120, 152, 344, 376
AspS9I	GGNCC	5 cut(s)	184, 185, 234, 411, 588
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	706
BbsI	GAAGAC	2 cut(s)	312, 467
BccI	CCATC	4 cut(s)	138, 397, 449, 509
BceAI	ACGGC	2 cut(s)	90, 375
BfaI	CTAG	2 cut(s)	248, 784
BfmI	CTRYAG	1 cut(s)	548
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	5 cut(s)	184, 185, 234, 411, 588
BmiI	GGNNCC	2 cut(s)	186, 412
BmsI	GCATC	2 cut(s)	57, 128
BpiI	GAAGAC	2 cut(s)	312, 467
BpuEI	CTTGAG	1 cut(s)	758
BsaBI	GATNNNNATC	2 cut(s)	430, 768
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	237, 391, 584
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse1I	ACTGG	4 cut(s)	591, 601, 609, 643
Bse8I	GATNNNNATC	2 cut(s)	430, 768
BseDI	CCNNGG	3 cut(s)	237, 391, 584
BseGI	GGATG	5 cut(s)	149, 166, 408, 521, 605
BseJI	GATNNNNATC	2 cut(s)	430, 768
BseNI	ACTGG	4 cut(s)	591, 601, 609, 643
BseSI	GKGCMC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	5 cut(s)	186, 356, 390, 413, 590
BsiSI	CCGG	1 cut(s)	621
BsnI	GGCC	5 cut(s)	186, 356, 390, 413, 590
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	39, 271, 365
BspACI	CCGC	2 cut(s)	5, 379
BspANI	GGCC	5 cut(s)	186, 356, 390, 413, 590
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	186, 412
BspPI	GGATC	3 cut(s)	34, 266, 373
BspQI	GCTCTTC	1 cut(s)	71
BsrI	ACTGG	4 cut(s)	591, 601, 609, 643
BssECI	CCNNGG	3 cut(s)	237, 391, 584
BssMI	GATC	3 cut(s)	39, 271, 365
BssNI	GRCGYC	1 cut(s)	464
BssSI	CACGAG	1 cut(s)	706
BssT1I	CCWWGG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	706
Bst6I	CTCTTC	2 cut(s)	32, 71
BstACI	GRCGYC	1 cut(s)	464
BstDSI	CCRYGG	2 cut(s)	391, 584
BstF5I	GGATG	5 cut(s)	149, 166, 408, 521, 605
BstKTI	GATC	3 cut(s)	42, 274, 368
BstMBI	GATC	3 cut(s)	39, 271, 365
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 419
BstSFI	CTRYAG	1 cut(s)	548
BstSLI	GKGCMC	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	312, 467
BstX2I	RGATCY	2 cut(s)	271, 365
BstYI	RGATCY	2 cut(s)	271, 365
BsuRI	GGCC	5 cut(s)	186, 356, 390, 413, 590
BtgI	CCRYGG	2 cut(s)	391, 584
BtsCI	GGATG	5 cut(s)	149, 166, 408, 521, 605
CciI	TCATGA	1 cut(s)	721
Cfr13I	GGNCC	5 cut(s)	184, 185, 234, 411, 588
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	333, 519
CviAII	CATG	1 cut(s)	722
CviQI	GTAC	2 cut(s)	333, 519
DpnI	GATC	3 cut(s)	41, 273, 367
DpnII	GATC	3 cut(s)	39, 271, 365
DraI	TTTAAA	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	32, 71
EarI	CTCTTC	2 cut(s)	32, 71
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	184, 185
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	725
FaiI	YATR	7 cut(s)	71, 89, 227, 506, 723, 750, 762
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	1 cut(s)	721
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	5 cut(s)	156, 173, 415, 508, 592
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	248, 784
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	186, 356, 390, 413, 590
HapII	CCGG	1 cut(s)	621
HgaI	GACGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	1 cut(s)	725
HinfI	GANTC	2 cut(s)	194, 626
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	335, 502, 664
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	37, 363, 369, 722
Hpy8I	GTNNAC	3 cut(s)	335, 502, 664
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	48, 283, 422, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 419
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	725
Kzo9I	GATC	3 cut(s)	39, 271, 365
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	116
LweI	GCATC	2 cut(s)	57, 128
MaeI	CTAG	2 cut(s)	248, 784
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	3 cut(s)	41, 273, 367
MboI	GATC	3 cut(s)	39, 271, 365
MboII	GAAGA	5 cut(s)	19, 58, 312, 472, 704
MflI	RGATCY	2 cut(s)	271, 365
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	7 cut(s)	128, 213, 382, 471, 491, 695, 713
MnlI	CCTC	3 cut(s)	35, 53, 309
MseI	TTAA	3 cut(s)	101, 177, 216
MspI	CCGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	2 cut(s)	387, 419
NdeII	GATC	3 cut(s)	39, 271, 365
NlaIII	CATG	1 cut(s)	725
NlaIV	GGNNCC	2 cut(s)	186, 412
NmuCI	GTSAC	1 cut(s)	596
PagI	TCATGA	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	194, 626
PkrI	GCNGC	1 cut(s)	7
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	186, 412
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	5 cut(s)	184, 185, 234, 411, 588
PsuI	RGATCY	2 cut(s)	271, 365
RsaI	GTAC	2 cut(s)	334, 520
RsaNI	GTAC	2 cut(s)	333, 519
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	101, 177, 216
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	39, 271, 365
Sau96I	GGNCC	5 cut(s)	184, 185, 234, 411, 588
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	8 cut(s)	86, 94, 232, 320, 549, 562, 671, 731
SfaNI	GCATC	2 cut(s)	57, 128
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	7 cut(s)	128, 213, 382, 471, 491, 695, 713
SsiI	CCGC	2 cut(s)	5, 379
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	2 cut(s)	248, 784
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	370
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	7 cut(s)	128, 213, 382, 471, 491, 695, 713
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	194, 626
Tru1I	TTAA	3 cut(s)	101, 177, 216
Tru9I	TTAA	3 cut(s)	101, 177, 216
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	58, 594
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	4 cut(s)	128, 471, 695, 713
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 448
XspI	CTAG	2 cut(s)	248, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.