RchiOBHm_Chr7g0242751

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
69070967 .. 69071239
273 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGCCCTACAAACCATTTCGGCCCTCAGATTTGCCGAAATCGATGTTTGATTTCAGAATGGCACTTGGTGTCGATGGAGAGATTACAGTGGAGACAGTTGAGAAACTGGTTGAGATTTGCAACACTGTGTTTGTGGACATTCAGGCTCTGATTCAGGTTTTTGATGGGGCTGTGAAAGTTGTGGGTTTGAAAAAGAGTGAATTTGTTCACCTCTTGCCCAGAATTGGGTTCATAAAGACGTTGGCGGAGGTGGCTCTGTTTTGGACATTTTAA

Protein Analysis

90

Amino Acids

10.19

Weight (kDa)

5.73

Isoelectric Point (pI)

21.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030497)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0242751
rosa_multiflora Rmu_sc0004165.1_g000035

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 224, 225
AgsI TTSAA 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 200
BccI CCATC 2 cut(s) 68, 158
BcoDI GTCTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 225
Bse1I ACTGG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 224, 225
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 111
BshFI GGCC 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 224, 225
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 22
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 38
BspDI ATCGAT 1 cut(s) 41
BsrI ACTGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 88, 97, 127
BstDEI CTNAG 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 1 cut(s) 22
BsuTUI ATCGAT 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 93, 123
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 41
CviJI RGCY 4 cut(s) 22, 146, 170, 254
CviKI_1 RGCY 4 cut(s) 22, 146, 170, 254
DdeI CTNAG 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 68
EciI GGCGGA 1 cut(s) 260
FaiI YATR 1 cut(s) 233
HaeIII GGCC 1 cut(s) 22
HinfI GANTC 1 cut(s) 151
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 136, 208
Hpy188I TCNGA 3 cut(s) 28, 56, 150
Hpy8I GTNNAC 2 cut(s) 136, 208
HpyCH4III ACNGT 3 cut(s) 88, 97, 127
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 239
LpnPI CCDG 4 cut(s) 92, 128, 140, 232
MaeII ACGT 1 cut(s) 239
MluCI AATT 2 cut(s) 200, 222
MnlI CCTC 3 cut(s) 34, 221, 241
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 21
SetI ASST 4 cut(s) 159, 213, 242, 252
SgeI CNNG 6 cut(s) 77, 119, 155, 167, 226, 231
Sse9I AATT 2 cut(s) 200, 222
SsiI CCGC 1 cut(s) 245
TaaI ACNGT 3 cut(s) 88, 97, 127
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 41, 72
TasI AATT 2 cut(s) 200, 222
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 2 cut(s) 93, 130
TspDTI ATGAA 1 cut(s) 220
TspRI CASTG 2 cut(s) 93, 130
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.