Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004165.1

Orthogroup ID

OG0030497

Physical Location & Seq

Genomic Coordinates Forward (+)

114352 .. 114858

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004165.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggagcagggaaaatttcttgtacttgaccttttatggggagaaatcgaacccatcccactttttctctcgcgggtccctattgctagaaattactgccatgatgttctcatctgtgacgacatcgttctagccgagacgctcaaaagggcggcttctttcatctccaacgtgctcgatgctgtctctcaagatcaggttctgaagcagttcaatgcctacgacccatttcggccctcggatctgcctgaatcgatgtttgatttcagaatggtgcttggtgttgacgacgagattacgatggagacagttgagaaactagttgagatttgcaacattgtgtttgtggacattcaggctctgattctggttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

125

Amino Acids

14.28

Weight (kDa)

4.19

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030497)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242751
rosa_multiflora	Rmu_sc0004165.1_g000035

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	73, 152
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	214
AhlI	ACTAGT	1 cut(s)	319
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	3 cut(s)	131, 190, 299
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	2 cut(s)	202, 361
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	76, 234
AvaII	GGWCC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	2 cut(s)	62, 295
BcoDI	GTCTC	3 cut(s)	131, 190, 299
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	3 cut(s)	87, 131, 320
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 234
BmiI	GGNNCC	2 cut(s)	77, 78
BmsI	GCATC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	3 cut(s)	131, 190, 299
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	193, 241
BspACI	CCGC	2 cut(s)	73, 152
BspANI	GGCC	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	77, 78
BspPI	GGATC	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	193, 241
Bst4CI	ACNGT	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	196, 244
BstMAI	GTCTC	3 cut(s)	131, 190, 299
BstMBI	GATC	2 cut(s)	193, 241
BstUI	CGCG	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	235
BsuTUI	ATCGAT	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	54
CaiI	CAGNNNCTG	2 cut(s)	202, 361
Cfr13I	GGNCC	2 cut(s)	76, 234
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	4 cut(s)	134, 155, 235, 359
CviKI_1	RGCY	4 cut(s)	134, 155, 235, 359
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	2 cut(s)	195, 243
DpnII	GATC	2 cut(s)	193, 241
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	1 cut(s)	104
FaiI	YATR	2 cut(s)	37, 102
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	3 cut(s)	87, 131, 320
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	251, 364
Hpy166II	GTNNAC	2 cut(s)	286, 349
Hpy188I	TCNGA	4 cut(s)	204, 241, 269, 363
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	286, 349
Hpy99I	CGWCG	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	104
KflI	GGGWCCC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	193, 241
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	182, 261, 341, 353
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	87, 131, 320
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	195, 243
MboI	GATC	2 cut(s)	193, 241
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	14, 91
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	209
MvnI	CGCG	1 cut(s)	73
NdeII	GATC	2 cut(s)	193, 241
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	77, 78
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	251, 364
PkrI	GCNGC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	77, 78
PspPI	GGNCC	2 cut(s)	76, 234
PspPPI	RGGWCCY	1 cut(s)	76
PstNI	CAGNNNCTG	2 cut(s)	202, 361
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	193, 241
Sau96I	GGNCC	2 cut(s)	76, 234
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	3 cut(s)	33, 174, 201
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SpeI	ACTAGT	1 cut(s)	319
Sse9I	AATT	2 cut(s)	14, 91
SsiI	CCGC	2 cut(s)	73, 152
SspMI	CTAG	3 cut(s)	87, 131, 320
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	48, 177, 254
TasI	AATT	2 cut(s)	14, 91
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	251, 364
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	3 cut(s)	87, 131, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.