Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030407

Physical Location & Seq

Genomic Coordinates Reverse (-)

988211 .. 989914

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCCCGGGCAGCTTCTAGAATACGGCAGCTGCTAGAGCAGCGCCAGCGGTCTTATCTGAAGCTCAAGGTTAAGGAGCGTGGCTGCAACGGCTTGTCGTACACTCTCAATTACGCAGATGATAGACAGTTCGATGAGTTGGTTGAAGATAAAGGCATGGATTTTGTGGATGACAAACTCAGGTCTGCTTTTATATTTATCAATCCCAAATCAAATGGACAATGCGGCTGCATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

79

Amino Acids

9.24

Weight (kDa)

8.91

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0245041
rosa_wichuraiana	Rw6G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	49, 225
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	3 cut(s)	14, 31, 64
AluI	AGCT	3 cut(s)	14, 31, 64
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	11, 28, 31, 40, 84, 228
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	7, 8
AvaI	CYCGRG	1 cut(s)	6
BbvI	GCAGC	6 cut(s)	18, 23, 40, 52, 71, 215
BceAI	ACGGC	2 cut(s)	41, 106
BcnI	CCSGG	2 cut(s)	7, 8
BfaI	CTAG	2 cut(s)	18, 35
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	7 cut(s)	12, 29, 32, 41, 85, 226, 229
BlsI	GCNGC	7 cut(s)	13, 30, 33, 42, 86, 227, 230
Bme1390I	CCNGG	2 cut(s)	7, 8
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	7, 8
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	7, 8
BsaJI	CCNNGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	193
BseXI	GCAGC	6 cut(s)	18, 23, 40, 52, 71, 215
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	7
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	49, 225
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 37, 40, 46, 90
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	5, 6
BstV1I	GCAGC	6 cut(s)	18, 23, 40, 52, 71, 215
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	157, 232
CviJI	RGCY	7 cut(s)	5, 14, 31, 64, 84, 93, 228
CviKI_1	RGCY	7 cut(s)	5, 14, 31, 64, 84, 93, 228
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	6
FaeI	CATG	2 cut(s)	160, 235
FaiI	YATR	3 cut(s)	158, 194, 233
FatI	CATG	2 cut(s)	156, 231
Fnu4HI	GCNGC	7 cut(s)	12, 29, 32, 41, 85, 226, 229
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	7 cut(s)	12, 29, 32, 41, 85, 226, 229
FspBI	CTAG	2 cut(s)	18, 35
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	7 cut(s)	12, 29, 32, 41, 85, 226, 229
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	160, 235
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	87, 231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 37, 40, 46, 90
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	160, 235
HspAI	GCGC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	3 cut(s)	20, 59, 166
Lsp1109I	GCAGC	6 cut(s)	18, 23, 40, 52, 71, 215
MaeI	CTAG	2 cut(s)	18, 35
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	109
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	31, 49
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	7, 8
MwoI	GCNNNNNNNGC	5 cut(s)	11, 37, 40, 46, 90
NciI	CCSGG	2 cut(s)	7, 8
NlaIII	CATG	2 cut(s)	160, 235
NspI	RCATGY	1 cut(s)	235
PkrI	GCNGC	7 cut(s)	13, 30, 33, 42, 86, 227, 230
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	7 cut(s)	12, 29, 32, 41, 85, 226, 229
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	7, 8
SetI	ASST	5 cut(s)	16, 33, 66, 72, 185
SmaI	CCCGGG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SrfI	GCCCGGGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	49, 225
SspMI	CTAG	2 cut(s)	18, 35
StyD4I	CCNGG	2 cut(s)	5, 6
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	109
TauI	GCSGC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	6 cut(s)	11, 28, 31, 40, 84, 228
TspMI	CCCGGG	1 cut(s)	6
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	235
XmaI	CCCGGG	1 cut(s)	6
XspI	CTAG	2 cut(s)	18, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.