RchiOBHm_Chr6g0248131

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0028223
Physical Location & Seq
Reverse (-)
4149859 .. 4150194
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGGAGGAACTGGCTTTCGAATTGAGAAGTAGTAAAAGAAAATTCATGTGGGTGATTAGAGAATCAGAAGCAAGGAAGGTCCCGAAAGGGTTCGTGGAGGAGACATCTGTAAAGGGTTTTGTGGTTTCCTGGTGTCCCCAACTGGAGGTTTTGGCTTATGAAGCAGTTGGTTGCTTCATTACACATTGTGGTTGGAACTCCACATTGGAGGCTTTGAGTTTGGGGTTCCAATGGTTGCAATGCCTTGATGGACCGACCAAAGCACCGATGCCAAGTACATTATGGATGTGTGGAAAATTGGGATCAGAGCTCAAGTTGATGAGAAAGGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

8.31

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 3 - 75 8.4e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028223)

Species Orthologous Gene IDs
malus_domestica MD10G1111200.v1.1
rosa_chinensis RchiOBHm_Chr6g0248131

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 79, 251
AsuHPI GGTGA 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 18
AvaII GGWCC 2 cut(s) 79, 251
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 79, 251
BmgT120I GGNCC 2 cut(s) 79, 251
BmiI GGNNCC 2 cut(s) 81, 227
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 15, 147
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 15, 147
BseRI GAGGAG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 312
BslFI GGGAC 2 cut(s) 65, 120
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 65, 120
Bsp119I TTCGAA 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 81, 227
BspPI GGATC 1 cut(s) 310
BspT104I TTCGAA 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 2 cut(s) 15, 147
BssMI GATC 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 18
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BtsCI GGATG 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 79, 251
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 46
CviJI RGCY 4 cut(s) 14, 155, 212, 310
CviKI_1 RGCY 4 cut(s) 14, 155, 212, 310
CviQI GTAC 1 cut(s) 276
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DraIII CACNNNGTG 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 79, 251
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 159, 283
FaqI GGGAC 2 cut(s) 65, 120
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 164
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 67, 307
Hpy188III TCNNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 1 cut(s) 302
LpnPI CCDG 3 cut(s) 115, 128, 142
LweI GCATC 1 cut(s) 258
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 3 cut(s) 20, 41, 296
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 91, 139, 202
MroXI GAANNNNTTC 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 302
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 81, 227
NspV TTCGAA 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 81, 227
PspPI GGNCC 2 cut(s) 79, 251
PspPPI RGGWCCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 312
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 2 cut(s) 79, 251
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 312
SetI ASST 3 cut(s) 81, 150, 312
SfaNI GCATC 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 18
SinI GGWCC 2 cut(s) 79, 251
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 20, 41, 296
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 128
TaqI TCGA 1 cut(s) 18
TaqII GACCGA 1 cut(s) 268
TasI AATT 3 cut(s) 20, 41, 296
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 34, 166, 174
VpaK11BI GGWCC 2 cut(s) 79, 251
XapI RAATTY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.