Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030403

Physical Location & Seq

Genomic Coordinates Forward (+)

4553775 .. 4554539

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGAGCCTAGCACCAATACGACCTCGTTTCGGGAGGTGCCTCCCAACCTTTCGAGCATTCTCTTCTTCTTCTTCTTCTTCAGAGTTCAGAAGTTCAGATTACTCCAACCAGTCCCGCGGTGGCCTCCCTCGCTTCTTCTCCGAACGCCTCCCTTCTTCCAAGGCACTTCCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGGAGGCCTAGTTCGTGTTCAAGACGATGAGTTCTGGCACATGGCTGAAGTCTTGAGATTGCGCGCCAACAATAGGAAATTAGGATACTTTATTTTCTATGCTGTAATTGTGGATTTAGTGGTGGTGTGGATAAATGTGTGCAAGGGTAGAGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

10.34

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030403)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0248571
rosa_samantha	Rh6CG041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccII	CGCG	2 cut(s)	120, 282
AciI	CCGC	2 cut(s)	118, 120
AcuI	CTGAAG	2 cut(s)	66, 285
AfiI	CCNNNNNNNGG	2 cut(s)	32, 291
AgsI	TTSAA	1 cut(s)	239
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
AoxI	GGCC	2 cut(s)	124, 223
AspLEI	GCGC	2 cut(s)	282, 284
BanI	GGYRCC	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	11, 227
BfuI	GTATCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	118, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 291
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	118, 162
BseLI	CCNNNNNNNGG	2 cut(s)	32, 291
BseNI	ACTGG	1 cut(s)	112
BsePI	GCGCGC	1 cut(s)	280
Bsh1236I	CGCG	2 cut(s)	120, 282
BshFI	GGCC	2 cut(s)	126, 225
BshNI	GGYRCC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	32, 291
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	126, 225
BspACI	CCGC	2 cut(s)	118, 120
BspANI	GGCC	2 cut(s)	126, 225
BspFNI	CGCG	2 cut(s)	120, 282
BspLI	GGNNCC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	118, 162
BssHII	GCGCGC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	120, 282
BstHHI	GCGC	2 cut(s)	282, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstUI	CGCG	2 cut(s)	120, 282
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	126, 225
BtgI	CCRYGG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	2 cut(s)	282, 284
Cfr42I	CCGCGG	1 cut(s)	121
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	5 cut(s)	9, 126, 225, 263, 371
CviKI_1	RGCY	5 cut(s)	9, 126, 225, 263, 371
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	66, 285
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	262
FaiI	YATR	3 cut(s)	219, 260, 318
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	125
FspBI	CTAG	2 cut(s)	11, 227
GlaI	GCGC	2 cut(s)	281, 283
HaeIII	GGCC	2 cut(s)	126, 225
HhaI	GCGC	2 cut(s)	282, 284
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	2 cut(s)	280, 282
HinP1I	GCGC	2 cut(s)	280, 282
Hpy188I	TCNGA	4 cut(s)	85, 92, 100, 145
Hpy188III	TCNNGA	3 cut(s)	34, 239, 271
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	4, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	2 cut(s)	280, 282
KspI	CCGCGG	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	125, 238
MaeI	CTAG	2 cut(s)	11, 227
MboII	GAAGA	8 cut(s)	57, 60, 63, 66, 69, 72, 130, 150
MluCI	AATT	2 cut(s)	296, 324
MmeI	TCCRAC	2 cut(s)	132, 197
MnlI	CCTC	7 cut(s)	30, 36, 53, 137, 141, 161, 215
MseI	TTAA	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	2 cut(s)	120, 282
MwoI	GCNNNNNNNGC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	41
PauI	GCGCGC	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	41
PteI	GCGCGC	1 cut(s)	280
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	376
SetI	ASST	4 cut(s)	28, 41, 53, 373
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	2 cut(s)	296, 324
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	118, 120
SspMI	CTAG	2 cut(s)	11, 227
StuI	AGGCCT	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	296, 324
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XspI	CTAG	2 cut(s)	11, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.