Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0030403

Physical Location & Seq

Genomic Coordinates Forward (+)

3969319 .. 3969725

Gene Structure 407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCAGAGCCTAGCACCAATACGACCTCGTTTCGCGAGGTGCCTCCCAACCTTTCGAGCATTCTCTTCTTCTTCTTCTTCTGATTACTCCACCCAGTCCCGCGCTTGCCTCCCTCACTTCTTATCCGAACGCCTCCCATCTTCCAAGGGAGGCCTAGTTCGTGTTCAAGAGGATGAGTTCTGGCACATGACTAAAGTCTTGAGATTGCGCGCCAACGATAGGAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrans_RNA

Protein Analysis

76

Amino Acids

8.76

Weight (kDa)

10.79

Isoelectric Point (pI)

75.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030403)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0248571
rosa_samantha	Rh6CG041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccII	CGCG	3 cut(s)	35, 102, 210
AciI	CCGC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AoxI	GGCC	1 cut(s)	151
AspLEI	GCGC	3 cut(s)	104, 210, 212
BanI	GGYRCC	1 cut(s)	39
BccI	CCATC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	11, 155
BmiI	GGNNCC	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BoxI	GACNNNNGTC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	94
BsePI	GCGCGC	1 cut(s)	208
Bsh1236I	CGCG	3 cut(s)	35, 102, 210
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	153
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	153
BspFNI	CGCG	3 cut(s)	35, 102, 210
BspLI	GGNNCC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	144
BssHII	GCGCGC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	106, 210
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	3 cut(s)	35, 102, 210
BstHHI	GCGC	3 cut(s)	104, 210, 212
BstPAI	GACNNNNGTC	1 cut(s)	194
BstUI	CGCG	3 cut(s)	35, 102, 210
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	178
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	106, 210
CfoI	GCGC	3 cut(s)	104, 210, 212
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	2 cut(s)	9, 153
CviKI_1	RGCY	2 cut(s)	9, 153
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	190
FaiI	YATR	2 cut(s)	188, 229
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	107
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	2 cut(s)	11, 155
GlaI	GCGC	3 cut(s)	103, 209, 211
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	3 cut(s)	104, 210, 212
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	3 cut(s)	102, 208, 210
HinP1I	GCGC	3 cut(s)	102, 208, 210
Hpy188I	TCNGA	2 cut(s)	82, 127
Hpy188III	TCNNGA	3 cut(s)	34, 167, 199
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	3 cut(s)	102, 208, 210
LpnPI	CCDG	2 cut(s)	107, 166
MaeI	CTAG	2 cut(s)	11, 155
MboII	GAAGA	6 cut(s)	57, 60, 63, 66, 69, 132
MluCI	AATT	1 cut(s)	224
MnlI	CCTC	8 cut(s)	30, 36, 53, 119, 123, 143, 143, 163
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	3 cut(s)	35, 102, 210
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	41
NruI	TCGCGA	1 cut(s)	35
PauI	GCGCGC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	153
PctI	GAATGC	1 cut(s)	59
PshAI	GACNNNNGTC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	41
PteI	GCGCGC	1 cut(s)	208
RruI	TCGCGA	1 cut(s)	35
SetI	ASST	3 cut(s)	28, 41, 53
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	224
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	11, 155
StuI	AGGCCT	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	224
XspI	CTAG	2 cut(s)	11, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.