RchiOBHm_Chr6g0251721

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020284
Physical Location & Seq
Reverse (-)
6990932 .. 6991426
495 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGATCGCAGTTTCGATTCTTGTAATTGCCACAAACTATCTGGACATTAAGGGGCTGCTGGATTTGACGTGCCAGACGGTGGCAGACATGATCAAGGCCTCAAGGGGAAGACTCCAGAAGAGATTCGCAAGCATTTCAACATCAAGAATGACTATACTCCAGAGAAAGAAGAGGAGGTGCGGAGGGAGAATCAATGGGCGTTTGAGTGAAGCCAAGGGCTGTCTATTCAATGTTGATAATGTAAATGGCAGTGGCGGAACTAGAAAATTATATTTGGGGGGCCGAAAAATAATGAAGTATTTTTAA

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

10.81

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1 PF01466 17 - 32 4.8e-06 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020284)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g01140 FvH4_2g01140 FvH4_2g01140 FvH4_2g01140 FvH4_2g01140
rosa_chinensis RchiOBHm_Chr6g0251721

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 2 cut(s) 180, 255
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 138, 229
AjiI CACGTC 1 cut(s) 69
AoxI GGCC 2 cut(s) 96, 280
ApeKI GCWGC 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 42
BclI TGATCA 1 cut(s) 90
BfaI CTAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 2 cut(s) 98, 143
BpuEI CTTGAG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 2 cut(s) 98, 282
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 2 cut(s) 98, 282
Bsp143I GATC 2 cut(s) 3, 90
BspACI CCGC 2 cut(s) 180, 255
BspANI GGCC 2 cut(s) 98, 282
BspLI GGNNCC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 3, 90
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 113, 164
BstC8I GCNNGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 6, 93
BstMBI GATC 2 cut(s) 3, 90
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 98, 282
BtrI CACGTC 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 280
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 55, 98, 212, 219, 282
CviKI_1 RGCY 5 cut(s) 55, 98, 212, 219, 282
DpnI GATC 2 cut(s) 5, 92
DpnII GATC 2 cut(s) 3, 90
Eam1104I CTCTTC 2 cut(s) 113, 164
EarI CTCTTC 2 cut(s) 113, 164
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 89, 155, 271
FatI CATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 261
GluI GCNGC 1 cut(s) 56
GsuI CTGGAG 2 cut(s) 98, 143
HaeIII GGCC 2 cut(s) 98, 282
Hin1II CATG 1 cut(s) 91
HinfI GANTC 4 cut(s) 16, 111, 123, 189
Hpy188III TCNNGA 4 cut(s) 41, 115, 144, 160
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 3, 90
LpnPI CCDG 5 cut(s) 26, 44, 86, 128, 173
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 68
MalI GATC 2 cut(s) 5, 92
MboI GATC 2 cut(s) 3, 90
MboII GAAGA 3 cut(s) 120, 130, 181
MluCI AATT 2 cut(s) 24, 266
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 4 cut(s) 109, 165, 168, 176
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 48, 304
NdeII GATC 2 cut(s) 3, 90
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 281
PceI AGGCCT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 3 cut(s) 16, 123, 189
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 48, 304
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 3, 90
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 105
SetI ASST 2 cut(s) 71, 179
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 2 cut(s) 24, 266
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 180, 255
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 98
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 24, 266
TfiI GAWTC 3 cut(s) 16, 123, 189
Tru1I TTAA 2 cut(s) 48, 304
Tru9I TTAA 2 cut(s) 48, 304
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 55
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.