RchiOBHm_Chr6g0251941

nudC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025054
Physical Location & Seq
Reverse (-)
7190670 .. 7191672
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGACTGTTCTTTCTGGACACTAGTCACTAGGGTAGAGGATGATATAATGCACATAACACTGCAAAAGAGGGACAAAGCTCAGACATGGGCTTCACCTATAGTGGGCGAGGGTCAGCTGGATCCCTACTCCACTAATCTTGAACAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAAGAGGTTCTTAAAGGCCATGATGTTTACCTTAGATGTGATTATTTGTTCAATGGGGGCTGCGCTGATCCAAGGACCTTCATGGGTGCTATCTGCTCCGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CS

Protein Analysis

93

Amino Acids

10.74

Weight (kDa)

4.96

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025054)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251941
rosa_roxburghii Rroxscaffold_7G00216280
rosa_samantha Rh6AG016500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 116, 129, 236
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 3 cut(s) 143, 173, 226
AhlI ACTAGT 1 cut(s) 22
AluBI AGCT 2 cut(s) 80, 118
AluI AGCT 2 cut(s) 80, 118
AlwI GGATC 3 cut(s) 116, 129, 236
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 249
BamHI GGATCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 221
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 23, 30
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 123
BoxI GACNNNNGTC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 121, 241
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 3 cut(s) 116, 129, 236
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 121, 241
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 81, 206
BstF5I GGATG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 124, 244
BstMBI GATC 2 cut(s) 121, 241
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstPAI GACNNNNGTC 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 249
CseI GACGC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 3 cut(s) 87, 194, 256
CviJI RGCY 5 cut(s) 80, 92, 118, 192, 234
CviKI_1 RGCY 5 cut(s) 80, 92, 118, 192, 234
DdeI CTNAG 2 cut(s) 81, 206
DpnI GATC 2 cut(s) 123, 243
DpnII GATC 2 cut(s) 121, 241
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 3 cut(s) 90, 197, 259
FaiI YATR 8 cut(s) 47, 56, 88, 101, 158, 195, 257, 280
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 86, 193, 255
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 2 cut(s) 23, 30
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 192
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 239
Hin1II CATG 3 cut(s) 90, 197, 259
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 275
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 84, 274
Hpy188III TCNNGA 4 cut(s) 16, 140, 163, 173
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 52, 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 81, 206
Hsp92II CATG 3 cut(s) 90, 197, 259
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 121, 241
LmnI GCTCC 2 cut(s) 165, 275
LpnPI CCDG 2 cut(s) 104, 176
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 2 cut(s) 23, 30
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 123, 243
MboI GATC 2 cut(s) 121, 241
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 121
MnlI CCTC 5 cut(s) 31, 63, 103, 159, 172
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 2 cut(s) 121, 241
NlaIII CATG 3 cut(s) 90, 197, 259
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 249
PspPPI RGGWCCY 1 cut(s) 249
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 121, 241
Sau96I GGNCC 1 cut(s) 249
SetI ASST 7 cut(s) 82, 100, 120, 170, 183, 207, 254
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 22
SspMI CTAG 2 cut(s) 23, 30
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 8
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 244, 267
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 23, 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.