RchiOBHm_Chr6g0252071

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030324
Physical Location & Seq
Forward (+)
7284830 .. 7285733
904 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
ATGCAAGATATATTTACTTTTTCAACTTCTAGTTCTTCTTCAGTAATTGGATATGTTGGTTCTTCTACAACAAATTTAGTACCACTGTGGCTTGATTCTAAGAAACCCAATTCGGTTGTATATGCATGTTTCGGAAGCATGATCAACTTTGCTGATTGTCAGCTCCTAGAAATTGCAGCAGGCCTTGAGGCTTCTGGACAGGACTTCATTTGGGTTGTGAAGAAACAAAAGAAAGAGATAGAAAAGTGGTTCCCTGAAGGATTTGAGAAGAGAATGGAAGGTAAGGGACTGATTATAAGAGATTGGACTCCTCAAGTGTTGATTCTTGAGCACAAAGCAAGTGAGGCCAGTGTGAAGAGGGAGGCCATGGAGAAGGCTGTGACAAGAATCATGGAGGGTGATGATGCAGAGAAAATGAGAAACAGAGCTAAAGCGCTTGGAGAGATGGCAAGCAGGGCTGTTGAAGAAGGTGGTTCATCTTTCTCGGATTTAACTTCTCTAATTGAAGAGTTGAGGACCCTTAATGGATTTTTCTTCAGGACTAAATGGCGAGAAAGAAACGTTGCCTGTAGTAATCCTTTGCTGCTCACTGCAACTAAATCATCACCTCCCCAAGTTTTTAAATTGTTGTTTGGCAATTATCCTAGTGTTGGTTTATTGAAAAATAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

224

Amino Acids

25.06

Weight (kDa)

8.9

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030324)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0252071 RchiOBHm_Chr6g0255921

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AclI AACGTT 1 cut(s) 561
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 3 cut(s) 24, 276, 520
AfaI GTAC 1 cut(s) 81
AfeI AGCGCT 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 650
AgsI TTSAA 4 cut(s) 24, 464, 506, 661
AluBI AGCT 2 cut(s) 163, 428
AluI AGCT 2 cut(s) 163, 428
Alw21I GWGCWC 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 3 cut(s) 181, 345, 363
ApeKI GCWGC 2 cut(s) 176, 583
ApoI RAATTY 1 cut(s) 73
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 410, 597
AvaII GGWCC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 188, 570
BccI CCATC 1 cut(s) 439
BclI TGATCA 1 cut(s) 141
BfaI CTAG 3 cut(s) 30, 167, 645
BfmI CTRYAG 1 cut(s) 568
BfoI RGCGCY 1 cut(s) 437
BisI GCNGC 2 cut(s) 177, 584
BlsI GCNGC 2 cut(s) 178, 585
Bme18I GGWCC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 251, 518
BmsI GCATC 1 cut(s) 394
BpuEI CTTGAG 3 cut(s) 206, 297, 347
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 650
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 188, 570
BshFI GGCC 3 cut(s) 183, 347, 365
BsiHKAI GWGCWC 1 cut(s) 333
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 3 cut(s) 183, 347, 365
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 141
Bsp19I CCATGG 1 cut(s) 366
BspANI GGCC 3 cut(s) 183, 347, 365
BspLI GGNNCC 2 cut(s) 251, 518
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 3 cut(s) 263, 350, 501
BstC8I GCNNGC 2 cut(s) 181, 451
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 366
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 344, 455
BstNSI RCATGY 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 568
BstV1I GCAGC 2 cut(s) 188, 570
BsuRI GGCC 3 cut(s) 183, 347, 365
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 83, 355, 588
Cac8I GCNNGC 2 cut(s) 181, 451
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 516
Csp6I GTAC 1 cut(s) 80
CviAII CATG 4 cut(s) 126, 139, 367, 391
CviJI RGCY 9 cut(s) 91, 163, 183, 191, 347, 365, 377, 428, 458
CviKI_1 RGCY 9 cut(s) 91, 163, 183, 191, 347, 365, 377, 428, 458
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DraI TTTAAA 1 cut(s) 622
Eam1104I CTCTTC 3 cut(s) 263, 350, 501
EarI CTCTTC 3 cut(s) 263, 350, 501
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 516
Eco47III AGCGCT 1 cut(s) 435
Eco57I CTGAAG 3 cut(s) 24, 276, 520
EcoO109I RGGNCCY 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 4 cut(s) 129, 142, 370, 394
FaiI YATR 9 cut(s) 11, 54, 121, 123, 127, 140, 296, 368, 392
FaqI GGGAC 1 cut(s) 300
FatI CATG 4 cut(s) 125, 138, 366, 390
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 177, 584
Fsp4HI GCNGC 2 cut(s) 177, 584
FspBI CTAG 3 cut(s) 30, 167, 645
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 177, 584
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 3 cut(s) 183, 347, 365
HhaI GCGC 1 cut(s) 436
Hin1II CATG 4 cut(s) 129, 142, 370, 394
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 4 cut(s) 95, 307, 322, 387
HphI GGTGA 2 cut(s) 410, 597
Hpy188I TCNGA 2 cut(s) 134, 487
Hpy188III TCNNGA 3 cut(s) 195, 326, 538
HpyAV CCTTC 4 cut(s) 251, 272, 367, 461
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 5 cut(s) 4, 125, 176, 407, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 455
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 4 cut(s) 129, 142, 370, 394
HspAI GCGC 1 cut(s) 434
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 8 cut(s) 165, 180, 185, 267, 361, 439, 523, 580
Lsp1109I GCAGC 2 cut(s) 188, 570
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 30, 167, 645
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 9 cut(s) 27, 30, 54, 232, 280, 367, 476, 518, 526
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 7 cut(s) 45, 73, 109, 171, 501, 623, 637
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 8 cut(s) 181, 321, 337, 351, 355, 388, 507, 618
Mph1103I ATGCAT 1 cut(s) 127
MseI TTAA 3 cut(s) 491, 522, 621
MwoI GCNNNNNNNGC 2 cut(s) 344, 455
NcoI CCATGG 1 cut(s) 366
NdeII GATC 1 cut(s) 141
NlaIII CATG 4 cut(s) 129, 142, 370, 394
NlaIV GGNNCC 2 cut(s) 251, 518
NmuCI GTSAC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
PceI AGGCCT 1 cut(s) 183
PfeI GAWTC 3 cut(s) 95, 322, 387
PkrI GCNGC 2 cut(s) 178, 585
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 1 cut(s) 516
PsiI TTATAA 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 251, 518
PspPI GGNCC 1 cut(s) 516
PspPPI RGGWCCY 1 cut(s) 516
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 491, 522, 621
SatI GCNGC 2 cut(s) 177, 584
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 165, 283, 430, 472, 564, 610
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 1 cut(s) 516
SmlI CTYRAG 3 cut(s) 185, 312, 326
SmoI CTYRAG 3 cut(s) 185, 312, 326
Sse9I AATT 7 cut(s) 45, 73, 109, 171, 501, 623, 637
SseBI AGGCCT 1 cut(s) 183
SspMI CTAG 3 cut(s) 30, 167, 645
StuI AGGCCT 1 cut(s) 183
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 564
TasI AATT 7 cut(s) 45, 73, 109, 171, 501, 623, 637
TfiI GAWTC 3 cut(s) 95, 322, 387
Tru1I TTAA 3 cut(s) 491, 522, 621
Tru9I TTAA 3 cut(s) 491, 522, 621
TscAI CASTG 3 cut(s) 90, 355, 595
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 176, 583
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 196, 465
TspRI CASTG 3 cut(s) 90, 355, 595
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 129
XspI CTAG 3 cut(s) 30, 167, 645
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.