RchiOBHm_Chr6g0254121

Belongs to the eukaryotic ribosomal protein eS6 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
9179841 .. 9182610
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 126 bp
ATGGGAGGTTGTGACAAGAAAATCTATCCTTCGAAGCAAGGAGTGTTAACCCCAGGGTGTGTTCGCCTTTTGCTCCACAAGGGAGCCTCATGCTTCCAAGGACATGGTAGGAGGAATAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

41

Amino Acids

4.43

Weight (kDa)

9.65

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022336)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 52, 53, 97
BsaXI ACNNNNNCTCC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 52, 53, 97
Bsp119I TTCGAA 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 52, 53, 97
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 32
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 104
CviAII CATG 2 cut(s) 90, 104
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 93, 107
FaiI YATR 2 cut(s) 91, 105
FatI CATG 2 cut(s) 89, 103
Hin1II CATG 2 cut(s) 93, 107
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HpaI GTTAAC 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 93, 107
KspAI GTTAAC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 78, 83
LpnPI CCDG 2 cut(s) 39, 66
MaeIII GTNAC 1 cut(s) 11
MnlI CCTC 2 cut(s) 97, 105
MseI TTAA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 93, 107
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 11
NspV TTCGAA 1 cut(s) 32
PasI CCCWGGG 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 54
SetI ASST 1 cut(s) 10
SfuI TTCGAA 1 cut(s) 32
SgeI CNNG 8 cut(s) 28, 50, 65, 66, 91, 102, 110, 116
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 97
TaqI TCGA 1 cut(s) 32
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.