RchiOBHm_Chr6g0259501

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
14742922 .. 14743164
243 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGAAGATTTGTAACTTGACCAGGGATGCGTGTAAAGAATATGCTCAAGAAGTAGAAAATCTACTTCTAAAGTTGATGGGACTCATAGTCATTTCCTTGAGCCTAGGCTTGCCAGAAAGCAAAAACAGGTTCGGGAGCTTCTTCAAAGACCAATCCAGTTCTGTTGCACTCAATTACTATCCACCTCGTCCTTCCCCTCATTTAGCTGTTGGTGTTGGTCACCACAGGGATGGGGTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.87

Weight (kDa)

8.69

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030396)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0259501
rosa_samantha Rh6BG098300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 145
AhdI GACNNNNNGTC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 2 cut(s) 138, 206
AluI AGCT 2 cut(s) 138, 206
Alw21I GWGCWC 1 cut(s) 240
AspA2I CCTAGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 212
AvrII CCTAGG 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 2 cut(s) 70, 224
BciT130I CCWGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 104
BlnI CCTAGG 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 22
BmeRI GACNNNNNGTC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 2 cut(s) 30, 118
BsaJI CCNNGG 2 cut(s) 21, 103
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 21, 103
BseGI GGATG 2 cut(s) 31, 235
BseNI ACTGG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 21, 103
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 110
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 31, 235
BstNI CCWGG 1 cut(s) 22
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 31, 235
Cac8I GCNNGC 1 cut(s) 110
CviJI RGCY 4 cut(s) 102, 108, 138, 206
CviKI_1 RGCY 4 cut(s) 102, 108, 138, 206
DriI GACNNNNNGTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 103
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaiI YATR 2 cut(s) 42, 86
FaqI GGGAC 1 cut(s) 93
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 104
HinfI GANTC 1 cut(s) 81
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 2 cut(s) 47, 133
HpyAV CCTTC 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 167
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 7, 34, 112, 126, 169, 211
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 11, 218
MboII GAAGA 2 cut(s) 16, 133
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 195, 207
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 218
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 228
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 240
SetI ASST 4 cut(s) 131, 140, 187, 208
SfaNI GCATC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 45, 97
SmoI CTYRAG 2 cut(s) 45, 97
Sse9I AATT 1 cut(s) 172
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 103
TasI AATT 1 cut(s) 172
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 17
XmaJI CCTAGG 1 cut(s) 103
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.