Rh6BG098300

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
15350391 .. 15350696
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG098300.1

Sequence Viewer

Length: 306 bp
ATGAAGATTTGTAACTTGACCAGGGATGCGTGTAAAGAATATGTTCAAGAAGTAGAAAATCTACTTCTAAAGTTGATGGGACTCATAGTCATTTCCTTGAGCCTAGGCTTGCCAGAAAGCAAAAACAGGTTCGGGCGCTTCTTCAAAGACCAGTCCAGTTCTGTTGCACTCAATTACTATCGACCTCGTCCTTCCCCTCATTTAGCTGTTGGTGTTGGTCACCACAGGGATGGGGGTGCTCTAACCGTTACATTTCTTCTAGCTCTAAGGCTATCTCCAATGGAAGATTCAAAGTCTATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.31

Weight (kDa)

9.34

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0030396)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0259501
rosa_samantha Rh6BG098300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 47, 145, 291
AhdI GACNNNNNGTC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 2 cut(s) 206, 263
AluI AGCT 2 cut(s) 206, 263
Alw21I GWGCWC 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 103
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 212
AvrII CCTAGG 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 2 cut(s) 70, 224
BciT130I CCWGG 1 cut(s) 22
BfaI CTAG 2 cut(s) 104, 260
BfoI RGCGCY 1 cut(s) 139
BlnI CCTAGG 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 22
BmeRI GACNNNNNGTC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 21, 103
Bse1I ACTGG 2 cut(s) 151, 156
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 21, 103
BseGI GGATG 2 cut(s) 31, 235
BseNI ACTGG 2 cut(s) 151, 156
BsiHKAI GWGCWC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 241
BsrI ACTGG 2 cut(s) 151, 156
BssECI CCNNGG 2 cut(s) 21, 103
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 266
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 31, 235
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 22
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 31, 235
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 138
CviJI RGCY 5 cut(s) 102, 108, 206, 263, 271
CviKI_1 RGCY 5 cut(s) 102, 108, 206, 263, 271
DdeI CTNAG 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 103
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaiI YATR 3 cut(s) 42, 86, 299
FaqI GGGAC 1 cut(s) 93
FokI GGATG 2 cut(s) 38, 242
FspBI CTAG 2 cut(s) 104, 260
GlaI GCGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 139
HhaI GCGC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 2 cut(s) 81, 287
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 266
HspAI GCGC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 7, 34, 112, 126, 164, 169, 211
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 104, 260
MaeIII GTNAC 3 cut(s) 11, 218, 247
MboII GAAGA 4 cut(s) 16, 133, 248, 296
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 195, 207
MroXI GAANNNNTTC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 186
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 228
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 241
SetI ASST 4 cut(s) 131, 187, 208, 265
SfaNI GCATC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 1 cut(s) 172
SspMI CTAG 2 cut(s) 104, 260
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 287
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 186
XmaJI CCTAGG 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 104, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.