Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030370

Physical Location & Seq

Genomic Coordinates Forward (+)

28861221 .. 28862396

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGTTGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGTAGAGGTTATGAGCTTCGGGATGCCGTAGATGGAATGCTGTCACAGATGGACCCTGCACTGATTGCATATTGTGACAAGATCGCTGCTGATGGTGGTCCAGAACATATACCCGAGGCCCTAGGGGTAACTACTTTCCCATCAATACATGTTGTACAGCTGGGAACTGTCACTAGGGCGAGTGCTCGACTTCGCAATGTGCAGCCGGAGGTAAATCTGGATCATAGCTATGAGGCACACAAACGGCCGAAGAAGAATATTGATGCCGCACCTGCAGCTTCAGCAGCAGAAGACAAGTCACAGCATCAAGGTTCTGTACCTTCCACGTCATCTCAGGAACCCGAGACGAATAACACAGATCTTGAAGTGCCAGAAACCTCTCCTGTTGTTCTCAATCAGCTTGAAACTTTTGAAGTAGTAGAAGTTTCTGGCCATGCTGATGCGAGTGGGTCTGAAGACATCAAGATGTTAGATGGTGAGATTACAAACCAAATGGAGTCTGTCAAGCGGCTTTTTGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

189

Amino Acids

20.42

Weight (kDa)

4.63

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030370)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270811
rosa_wichuraiana	Rw6G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	2 cut(s)	312, 553
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	2 cut(s)	290, 475
AcuI	CTGAAG	2 cut(s)	309, 519
AfaI	GTAC	2 cut(s)	201, 363
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	410, 449, 458
AjiI	CACGTC	1 cut(s)	372
AluBI	AGCT	5 cut(s)	61, 205, 273, 323, 445
AluI	AGCT	5 cut(s)	61, 205, 273, 323, 445
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	273
Ama87I	CYCGRG	2 cut(s)	158, 386
AoxI	GGCC	3 cut(s)	162, 290, 475
ApeKI	GCWGC	4 cut(s)	131, 247, 320, 329
AspA2I	CCTAGG	1 cut(s)	166
AspS9I	GGNCC	3 cut(s)	97, 143, 163
AsuHPI	GGTGA	1 cut(s)	533
AvaI	CYCGRG	2 cut(s)	158, 386
AvaII	GGWCC	2 cut(s)	97, 143
AvrII	CCTAGG	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	477
BbsI	GAAGAC	2 cut(s)	342, 507
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	118, 259, 332, 341
BccI	CCATC	5 cut(s)	71, 88, 131, 193, 512
BceAI	ACGGC	2 cut(s)	56, 305
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	3 cut(s)	36, 167, 219
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	6 cut(s)	132, 248, 312, 321, 330, 554
BlnI	CCTAGG	1 cut(s)	166
BlsI	GCNGC	6 cut(s)	133, 249, 313, 322, 331, 555
Bme18I	GGWCC	2 cut(s)	97, 143
BmeT110I	CYCGRG	2 cut(s)	158, 386
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	3 cut(s)	97, 143, 163
BmiI	GGNNCC	2 cut(s)	99, 384
BmsI	GCATC	4 cut(s)	58, 298, 358, 475
BpiI	GAAGAC	2 cut(s)	342, 507
BsaJI	CCNNGG	2 cut(s)	159, 166
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	159, 166
BseGI	GGATG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	392
BseX3I	CGGCCG	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	118, 259, 332, 341
BseYI	CCCAGC	1 cut(s)	205
BsgI	GTGCAG	2 cut(s)	87, 266
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	164, 292, 477
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	2 cut(s)	158, 386
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	164, 292, 477
BsoBI	CYCGRG	2 cut(s)	158, 386
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	126, 265, 403
BspACI	CCGC	2 cut(s)	312, 553
BspANI	GGCC	3 cut(s)	164, 292, 477
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	99, 384
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	159, 166
BssMI	GATC	3 cut(s)	126, 265, 403
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	3 cut(s)	129, 268, 406
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	126, 265, 403
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 317, 320, 326, 329
BstNSI	RCATGY	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	118, 259, 332, 341
BstV2I	GAAGAC	2 cut(s)	342, 507
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	164, 292, 477
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	97, 143, 163
Csp6I	GTAC	2 cut(s)	200, 362
CviAII	CATG	2 cut(s)	194, 479
CviQI	GTAC	2 cut(s)	200, 362
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	3 cut(s)	128, 267, 405
DpnII	GATC	3 cut(s)	126, 265, 403
EaeI	YGGCCR	2 cut(s)	290, 475
EagI	CGGCCG	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	97, 143
Eco52I	CGGCCG	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	309, 519
Eco88I	CYCGRG	2 cut(s)	158, 386
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	197, 482
FaiI	YATR	9 cut(s)	12, 57, 115, 153, 155, 195, 270, 276, 480
FatI	CATG	2 cut(s)	193, 478
Fnu4HI	GCNGC	6 cut(s)	132, 248, 312, 321, 330, 554
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	6 cut(s)	132, 248, 312, 321, 330, 554
FspBI	CTAG	3 cut(s)	36, 167, 219
GluI	GCNGC	6 cut(s)	132, 248, 312, 321, 330, 554
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	164, 292, 477
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	2 cut(s)	197, 482
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	533
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	6 cut(s)	65, 146, 263, 380, 407, 508
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	104, 113, 247, 320
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 317, 320, 326, 329
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	197, 482
Kzo9I	GATC	3 cut(s)	126, 265, 403
Lsp1109I	GCAGC	4 cut(s)	118, 259, 332, 341
LweI	GCATC	4 cut(s)	58, 298, 358, 475
MaeI	CTAG	3 cut(s)	36, 167, 219
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	5 cut(s)	87, 119, 172, 214, 342
MalI	GATC	3 cut(s)	128, 267, 405
MboI	GATC	3 cut(s)	126, 265, 403
MboII	GAAGA	4 cut(s)	307, 310, 347, 512
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	551
MnlI	CCTC	5 cut(s)	44, 154, 247, 271, 433
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MslI	CAYNNNNRTG	3 cut(s)	273, 483, 509
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	110, 317, 320, 326, 329
NdeII	GATC	3 cut(s)	126, 265, 403
NlaIII	CATG	2 cut(s)	197, 482
NlaIV	GGNNCC	2 cut(s)	99, 384
NmuCI	GTSAC	4 cut(s)	87, 119, 214, 342
NspI	RCATGY	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	325
PciI	ACATGT	1 cut(s)	193
PctI	GAATGC	1 cut(s)	87
PkrI	GCNGC	6 cut(s)	133, 249, 313, 322, 331, 555
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PscI	ACATGT	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	99, 384
PspPI	GGNCC	3 cut(s)	97, 143, 163
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	201, 363
RsaNI	GTAC	2 cut(s)	200, 362
RseI	CAYNNNNRTG	3 cut(s)	273, 483, 509
SatI	GCNGC	6 cut(s)	132, 248, 312, 321, 330, 554
Sau3AI	GATC	3 cut(s)	126, 265, 403
Sau96I	GGNCC	3 cut(s)	97, 143, 163
SchI	GAGTC	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	4 cut(s)	58, 298, 358, 475
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	97, 143
SmiMI	CAYNNNNRTG	3 cut(s)	273, 483, 509
SsiI	CCGC	2 cut(s)	312, 553
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	36, 167, 219
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	232
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	2 cut(s)	314, 556
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	4 cut(s)	87, 119, 214, 342
TseI	GCWGC	4 cut(s)	131, 247, 320, 329
Tsp45I	GTSAC	4 cut(s)	87, 119, 214, 342
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	97, 143
XceI	RCATGY	1 cut(s)	197
XmaJI	CCTAGG	1 cut(s)	166
XspI	CTAG	3 cut(s)	36, 167, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.