Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0030370

Physical Location & Seq

Genomic Coordinates Forward (+)

28194166 .. 28195296

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTATTATGTTTCCTCTTACGTACATGGAATGCTGTCACAGATGGACCCTGTACTGATTGCATATTGTGACAAGATCGCTGATGAAGGTGGTCCAGAACATATACCCGAGGCCCTAGGGCTGGGAACAGTCACTAGGGCGAGTGCTCGACTTCGCAATGTGCAGCCGGAGGTAAATCTGGATCATAGCTATGAGGCACACAAACGGCCGAAGAAGAATATTGATGCCGCACCTGCAGCTTCAGCAGCAGAAGACAAGTCACAGCATCAAAGTTCTGTACCTTCCACGTCATCTCAGGAACCCGAGACGAATAACACAGATCTTGAAGTGCCAGAAACCTCTCCTGTTGTTCTCAATCAGCTTGAAACTTTTGAAGTAGTAGAAGTTTCTGGCCATGCTGATGCGAGTGGGTCTGAAGACATCAAGATGTTAGATGGTGAGATTACAAACCAAATGGAGTCTGTCAAGCGGCTTTTTGTGGAGCGAACCAAAACTTATGACATTCCACAGCTTGAGAGGCTTTTTGCAAGAATTATGAAGGGCATTTTCGACATCAAGGACAAAAGCGATATAGATGGCACCAAGCGTTTAATTTTGAGGTATTTGTTGAAGTTTGCAGAGGATGAAGCAAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

212

Amino Acids

23.64

Weight (kDa)

4.89

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030370)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270811
rosa_wichuraiana	Rw6G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	2 cut(s)	228, 469
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	2 cut(s)	206, 391
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	225, 435
AfaI	GTAC	3 cut(s)	24, 54, 279
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	326, 365, 374, 610
AjiI	CACGTC	1 cut(s)	288
AluBI	AGCT	4 cut(s)	189, 239, 361, 511
AluI	AGCT	4 cut(s)	189, 239, 361, 511
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	2 cut(s)	107, 302
AoxI	GGCC	3 cut(s)	111, 206, 391
ApeKI	GCWGC	3 cut(s)	163, 236, 245
ApoI	RAATTY	1 cut(s)	631
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	46, 92, 112
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	2 cut(s)	107, 302
AvaII	GGWCC	2 cut(s)	46, 92
AvrII	CCTAGG	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	258, 423
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	175, 248, 257
BccI	CCATC	3 cut(s)	37, 428, 569
BceAI	ACGGC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	116, 135
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	5 cut(s)	164, 228, 237, 246, 470
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	5 cut(s)	165, 229, 238, 247, 471
Bme18I	GGWCC	2 cut(s)	46, 92
BmeT110I	CYCGRG	2 cut(s)	107, 302
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	3 cut(s)	46, 92, 112
BmiI	GGNNCC	3 cut(s)	48, 300, 580
BmsI	GCATC	3 cut(s)	214, 274, 391
BpiI	GAAGAC	2 cut(s)	258, 423
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	108, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	108, 115
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	308
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	175, 248, 257
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	113, 208, 393
BshNI	GGYRCC	1 cut(s)	578
BsiEI	CGRYCG	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	2 cut(s)	107, 302
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	113, 208, 393
BsoBI	CYCGRG	2 cut(s)	107, 302
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	75, 181, 319
BspACI	CCGC	2 cut(s)	228, 469
BspANI	GGCC	3 cut(s)	113, 208, 393
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	48, 300, 580
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	108, 115
BssMI	GATC	3 cut(s)	75, 181, 319
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	3 cut(s)	78, 184, 322
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	75, 181, 319
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 236, 242, 245, 517
BstSFI	CTRYAG	1 cut(s)	234
BstSNI	TACGTA	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	175, 248, 257
BstV2I	GAAGAC	2 cut(s)	258, 423
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	113, 208, 393
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	628
BveI	ACCTGC	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	46, 92, 112
Csp6I	GTAC	3 cut(s)	23, 53, 278
CviAII	CATG	2 cut(s)	26, 395
CviQI	GTAC	3 cut(s)	23, 53, 278
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	77, 183, 321
DpnII	GATC	3 cut(s)	75, 181, 319
EaeI	YGGCCR	2 cut(s)	206, 391
EagI	CGGCCG	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	206
Eco105I	TACGTA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	46, 92
Eco52I	CGGCCG	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	225, 435
Eco88I	CYCGRG	2 cut(s)	107, 302
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	2 cut(s)	29, 398
FatI	CATG	2 cut(s)	25, 394
Fnu4HI	GCNGC	5 cut(s)	164, 228, 237, 246, 470
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	5 cut(s)	164, 228, 237, 246, 470
FspBI	CTAG	2 cut(s)	116, 135
GluI	GCNGC	5 cut(s)	164, 228, 237, 246, 470
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	113, 208, 393
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	29, 398
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	2 cut(s)	415, 638
Hpy188III	TCNNGA	5 cut(s)	95, 179, 296, 323, 424
HpyAV	CCTTC	3 cut(s)	80, 291, 532
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	21, 287
HpyCH4V	TGCA	5 cut(s)	62, 163, 236, 527, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 236, 242, 245, 517
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	21, 287
Hsp92II	CATG	2 cut(s)	29, 398
Kzo9I	GATC	3 cut(s)	75, 181, 319
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	3 cut(s)	175, 248, 257
LweI	GCATC	3 cut(s)	214, 274, 391
MaeI	CTAG	2 cut(s)	116, 135
MaeII	ACGT	2 cut(s)	21, 287
MaeIII	GTNAC	4 cut(s)	36, 68, 130, 258
MalI	GATC	3 cut(s)	77, 183, 321
MboI	GATC	3 cut(s)	75, 181, 319
MboII	GAAGA	4 cut(s)	223, 226, 263, 428
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	3 cut(s)	531, 591, 631
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	8 cut(s)	25, 103, 163, 187, 349, 510, 591, 613
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	3 cut(s)	189, 399, 425
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	233, 236, 242, 245, 517
NdeII	GATC	3 cut(s)	75, 181, 319
NlaIII	CATG	2 cut(s)	29, 398
NlaIV	GGNNCC	3 cut(s)	48, 300, 580
NmuCI	GTSAC	4 cut(s)	36, 68, 130, 258
PaqCI	CACCTGC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	165, 229, 238, 247, 471
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	48, 300, 580
PspPI	GGNCC	3 cut(s)	46, 92, 112
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	3 cut(s)	24, 54, 279
RsaNI	GTAC	3 cut(s)	23, 53, 278
RseI	CAYNNNNRTG	3 cut(s)	189, 399, 425
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	5 cut(s)	164, 228, 237, 246, 470
Sau3AI	GATC	3 cut(s)	75, 181, 319
Sau96I	GGNCC	3 cut(s)	46, 92, 112
SchI	GAGTC	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	214, 274, 391
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	46, 92
SmiMI	CAYNNNNRTG	3 cut(s)	189, 399, 425
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SnaBI	TACGTA	1 cut(s)	22
Sse9I	AATT	3 cut(s)	531, 591, 631
SsiI	CCGC	2 cut(s)	228, 469
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	116, 135
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	24, 290
TaqI	TCGA	2 cut(s)	148, 549
TasI	AATT	3 cut(s)	531, 591, 631
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	2 cut(s)	230, 472
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TseFI	GTSAC	4 cut(s)	36, 68, 130, 258
TseI	GCWGC	3 cut(s)	163, 236, 245
Tsp45I	GTSAC	4 cut(s)	36, 68, 130, 258
TspDTI	ATGAA	3 cut(s)	99, 551, 639
VpaK11BI	GGWCC	2 cut(s)	46, 92
XapI	RAATTY	1 cut(s)	631
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	116, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.