RchiOBHm_Chr6g0272581

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030410
Physical Location & Seq
Forward (+)
32969228 .. 32970459
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGACCCCTCCGCATCAGAGAACTGGGTCGTTTGCCAGACGGGTCTTCGATGCCGCCCAAGCTGACGTCGTGTTCGTACCCTTTTTCGCTACTTTGAGCGCCGAGATGCAGCTGGCTAATGCTAAAGGAGCGTTTAAGAAGAAGGTTGGGAATGAAGACTATGAGAGGCAGAGGCAAGTGGTCGACTTGGTGAAGAACACTGAGGCTTGGAAGAGGTCAGGTGGAAGAGACCATGTCTTTGTGCTCACTGGTTATGTTAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

88

Amino Acids

9.92

Weight (kDa)

9.89

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 13 - 83 6.3e-13 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030410)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0272581
rosa_samantha Rh6CG187500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 183
AciI CCGC 2 cut(s) 11, 54
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 78
AluBI AGCT 2 cut(s) 62, 112
AluI AGCT 2 cut(s) 62, 112
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 109
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 221, 253
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 202
BbsI GAAGAC 2 cut(s) 37, 162
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 2 cut(s) 54, 110
BlsI GCNGC 2 cut(s) 55, 111
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 3 cut(s) 22, 40, 96
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 37, 162
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 28, 253
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 28, 253
BseXI GCAGC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 222
Bso31I GGTCTC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 246
BspACI CCGC 2 cut(s) 11, 54
BspCNI CTCAG 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 222
BsrI ACTGG 2 cut(s) 28, 253
BssNI GRCGYC 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 206, 220
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 59, 128
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 2 cut(s) 37, 162
BtsIMutI CAGTG 2 cut(s) 198, 246
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 233
CviJI RGCY 4 cut(s) 62, 112, 116, 206
CviKI_1 RGCY 4 cut(s) 62, 112, 116, 206
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 206, 220
EarI CTCTTC 2 cut(s) 206, 220
Eco31I GGTCTC 1 cut(s) 222
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 162, 234, 255
FatI CATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 54, 110
Fsp4HI GCNGC 2 cut(s) 54, 110
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 54, 110
HaeII RGCGCY 1 cut(s) 102
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 128
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 9, 49, 98, 204, 234
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 3 cut(s) 22, 40, 96
MaeII ACGT 1 cut(s) 66
MboII GAAGA 6 cut(s) 37, 151, 167, 205, 223, 237
MhlI GDGCHC 1 cut(s) 246
MnlI CCTC 5 cut(s) 18, 159, 165, 196, 207
MseI TTAA 2 cut(s) 135, 258
MspA1I CMGCKG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 59, 128
NlaIII CATG 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 55, 111
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 135, 258
SatI GCNGC 2 cut(s) 54, 110
SduI GDGCHC 1 cut(s) 246
SetI ASST 6 cut(s) 64, 69, 114, 147, 218, 223
SfaNI GCATC 3 cut(s) 22, 40, 96
SsiI CCGC 2 cut(s) 11, 54
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 48, 183
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 135, 258
Tru9I TTAA 2 cut(s) 135, 258
TscAI CASTG 2 cut(s) 205, 253
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 2 cut(s) 205, 253
Tth111I GACNNNGTC 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 183
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.