Rh6CG187500

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0030410
Physical Location & Seq
Forward (+)
30475573 .. 30476627
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG187500.1

Sequence Viewer

Length: 534 bp
ATGACCCCACCGCATCAGAGAACTGGGTCGTTTGCCAGACGGGTTTTCGATGCCGCCCAAGCTGACGTCGTGTTCGTACCCTTTTTCGCTACTTTGAGCGCCGAGATGCAGCTGGCTAATGCTAAAGGAGCGTTTAAGAAGAAGGTTGGGAATGAAGACTATGAGAGGCAGAGGCAAGTGGTCGACTTGGTGAAGAACACTGAGGCTTGGAAGAGGTCAGGTGGAAGAGACCATGTCTTTGTGCTCACTGACCCGGTCGCAATGTGGCATGTCAGAGCAGAGCTAGCGCCGGCAGTCCTCCTAGTTGTAGATTTTGGTGGGTGGTACAGGCTTGAATCCAAGTTGTCAAATGACAATTCATCAGACGTGATTCAGCAGACACAAGTTTCAATACTCAAAGATGTAATTGTGCCATACACCCATCTACTTCCTATATTGCAATTATCAGAAAACAAGAAGCGTCAGACTCTACTTTATTTCAAAGGAGCTAAACATAGGCACCGGGTCAGTATGAGAATTGAATTGTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

177

Amino Acids

20.25

Weight (kDa)

9.73

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 13 - 167 3.1e-22 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030410)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0272581
rosa_samantha Rh6CG187500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 183
AciI CCGC 2 cut(s) 11, 54
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 3 cut(s) 78, 326, 527
AgsI TTSAA 4 cut(s) 335, 390, 481, 521
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 4 cut(s) 62, 112, 283, 488
AluI AGCT 4 cut(s) 62, 112, 283, 488
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 109
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 221, 253
AspLEI GCGC 2 cut(s) 101, 289
AsuC2I CCSGG 2 cut(s) 254, 503
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 429
BcnI CCSGG 2 cut(s) 254, 503
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 284, 302
BfoI RGCGCY 2 cut(s) 102, 290
BisI GCNGC 2 cut(s) 54, 110
BlsI GCNGC 2 cut(s) 55, 111
Bme1390I CCNGG 2 cut(s) 254, 503
BmgBI CACGTC 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 2 cut(s) 254, 503
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 3 cut(s) 22, 40, 96
BmtI GCTAGC 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 254, 503
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 3 cut(s) 254, 290, 502
BsmAI GTCTC 1 cut(s) 222
Bso31I GGTCTC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 246
BspACI CCGC 2 cut(s) 11, 54
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 500
BspOI GCTAGC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 289
BssNI GRCGYC 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 206, 220
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 3 cut(s) 114, 285, 291
BstDEI CTNAG 1 cut(s) 201
BstH2I RGCGCY 2 cut(s) 102, 290
BstHHI GCGC 2 cut(s) 101, 289
BstMAI GTCTC 1 cut(s) 222
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 59, 128, 284
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 252, 501
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 162
BtrI CACGTC 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 198, 246
Cac8I GCNNGC 3 cut(s) 114, 285, 291
CfoI GCGC 2 cut(s) 101, 289
Cfr10I RCCGGY 1 cut(s) 289
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 77, 325, 526
CviAII CATG 2 cut(s) 233, 269
CviJI RGCY 7 cut(s) 62, 112, 116, 206, 283, 331, 488
CviKI_1 RGCY 7 cut(s) 62, 112, 116, 206, 283, 331, 488
CviQI GTAC 3 cut(s) 77, 325, 526
DdeI CTNAG 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 206, 220
EarI CTCTTC 2 cut(s) 206, 220
Eco31I GGTCTC 1 cut(s) 222
FaeI CATG 2 cut(s) 236, 272
FaiI YATR 7 cut(s) 162, 234, 270, 415, 434, 495, 512
FatI CATG 2 cut(s) 232, 268
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 54, 110
Fsp4HI GCNGC 2 cut(s) 54, 110
FspBI CTAG 2 cut(s) 284, 302
GlaI GCGC 2 cut(s) 100, 288
GluI GCNGC 2 cut(s) 54, 110
HaeII RGCGCY 2 cut(s) 102, 290
HapII CCGG 3 cut(s) 254, 290, 502
HgaI GACGC 1 cut(s) 449
HhaI GCGC 2 cut(s) 101, 289
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 236, 272
Hin6I GCGC 2 cut(s) 99, 287
HinP1I GCGC 2 cut(s) 99, 287
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 3 cut(s) 335, 370, 466
HpaII CCGG 3 cut(s) 254, 290, 502
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 5 cut(s) 18, 275, 364, 448, 465
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 66, 366
HpyCH4V TGCA 2 cut(s) 109, 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 128, 284
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 2 cut(s) 66, 366
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 236, 272
HspAI GCGC 2 cut(s) 99, 287
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
LmnI GCTCC 2 cut(s) 128, 485
LpnPI CCDG 8 cut(s) 9, 49, 98, 204, 267, 303, 313, 515
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 3 cut(s) 22, 40, 96
MaeI CTAG 2 cut(s) 284, 302
MaeII ACGT 2 cut(s) 66, 366
MboII GAAGA 5 cut(s) 151, 167, 205, 223, 237
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 5 cut(s) 355, 405, 440, 516, 521
MlyI GAGTC 1 cut(s) 460
MnlI CCTC 5 cut(s) 159, 165, 196, 207, 308
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 3 cut(s) 254, 290, 502
MspR9I CCNGG 2 cut(s) 254, 503
MwoI GCNNNNNNNGC 3 cut(s) 59, 128, 284
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 254, 503
NgoMIV GCCGGC 1 cut(s) 289
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 2 cut(s) 236, 272
NlaIV GGNNCC 1 cut(s) 500
NmeAIII GCCGAG 1 cut(s) 127
NspI RCATGY 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 335, 370
PflFI GACNNNGTC 2 cut(s) 233, 254
PkrI GCNGC 2 cut(s) 55, 111
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 500
PsyI GACNNNGTC 2 cut(s) 233, 254
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 3 cut(s) 78, 326, 527
RsaNI GTAC 3 cut(s) 77, 325, 526
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 2 cut(s) 54, 110
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 2 cut(s) 254, 503
SduI GDGCHC 1 cut(s) 246
SetI ASST 9 cut(s) 64, 69, 114, 147, 218, 223, 285, 369, 490
SfaNI GCATC 3 cut(s) 22, 40, 96
Sse9I AATT 5 cut(s) 355, 405, 440, 516, 521
SsiI CCGC 2 cut(s) 11, 54
SspMI CTAG 2 cut(s) 284, 302
StyD4I CCNGG 2 cut(s) 252, 501
TaiI ACGT 2 cut(s) 69, 369
TaqI TCGA 2 cut(s) 48, 183
TasI AATT 5 cut(s) 355, 405, 440, 516, 521
TatI WGTACW 1 cut(s) 525
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 335, 370
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 205, 253
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 168, 348
TspRI CASTG 2 cut(s) 205, 253
Tth111I GACNNNGTC 2 cut(s) 233, 254
XceI RCATGY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 284, 302
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.