RchiOBHm_Chr6g0275591

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0023970
Physical Location & Seq
Forward (+)
37465432 .. 37465770
339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGGTGAATACGCTGTATTTCTCCTGTCAGTTAAGACTTTTGGGTGTCCCCAGAGATGAGCATCAACCTATCATTGCAAAATTATACCAGGTGGCTGACGAGGCCGTCTCCCCCGAGTACCCTATTGTTGTTACCATCAGAGTTATATCTAAGCGGCGTAGCTTGGACTCTCAGACCCCGTCGTGTGCAATTTGTTTGGAGAATTTTGCTGACGAAGAAGACGTCGATCAACCCTTGATTACTCATATGCCCTGCGCACACCGTTATCATCAACATTGCATTGTCCCTTGGCTGGCAATCAACCCCTTGTGTCCTTTGTGTCGACAAAACCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

112

Amino Acids

12.81

Weight (kDa)

5.88

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 61 - 108 6.8e-13 Ring finger domain
zf-rbx1 PF12678 62 - 108 1.3e-07 RING-H2 zinc finger domain
zf-C3HC4 PF00097 62 - 107 2.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 62 - 107 2.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 62 - 94 2.5e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023970)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04730
rosa_chinensis RchiOBHm_Chr6g0275591
rosa_samantha Rh6BG198500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 225
Acc16I TGCGCA 1 cut(s) 256
AccI GTMKAC 1 cut(s) 322
AciI CCGC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 292
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 225
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 112
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse3DI GCAATG 2 cut(s) 72, 274
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 287
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 2 cut(s) 72, 274
BseMII CTCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 32, 269
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 2 cut(s) 32, 269
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 113
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 184
BsrDI GCAATG 2 cut(s) 72, 274
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 150, 171
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 4 cut(s) 95, 104, 162, 292
CviKI_1 RGCY 4 cut(s) 95, 104, 162, 292
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 150, 171
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 112
FaiI YATR 4 cut(s) 85, 146, 246, 248
FaqI GGGAC 2 cut(s) 32, 269
FauNDI CATATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
FspI TGCGCA 1 cut(s) 256
GlaI GCGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 104
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 1 cut(s) 167
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 140, 174
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 2 cut(s) 184, 227
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 77, 188, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 150, 171
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 37, 64, 74, 101, 265, 278
LweI GCATC 1 cut(s) 70
MabI ACCWGGT 1 cut(s) 87
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 227, 230
MluCI AATT 4 cut(s) 80, 189, 202, 334
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 1 cut(s) 94
MseI TTAA 2 cut(s) 32, 337
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeI CATATG 1 cut(s) 246
NdeII GATC 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SalI GTCGAC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 32, 337
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 89
SetI ASST 4 cut(s) 70, 93, 164, 225
SexAI ACCWGGT 1 cut(s) 87
SfaNI GCATC 1 cut(s) 70
Sse9I AATT 4 cut(s) 80, 189, 202, 334
SsiI CCGC 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 225, 322
TasI AATT 4 cut(s) 80, 189, 202, 334
TauI GCSGC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 32, 337
Tru9I TTAA 2 cut(s) 32, 337
Tth111I GACNNNGTC 1 cut(s) 178
XapI RAATTY 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 322
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.