Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030310

Physical Location & Seq

Genomic Coordinates Reverse (-)

37738809 .. 37739487

Gene Structure 679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGCCAAATAGCCAAGAATCCGTAAATGGGGGCAAGTACCCTAACCCAACCATGACCAACCTGGACCTCGAGCACCAACCCACCCAAGACCTCAATACTTCCCAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTTCGTGCCGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCGTCTTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACATTAAAGCCATGATACTAACCGGGTTTGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAACAAAAACAACAAGCAAAAGAGCCCGGTGGTACACGTGGTAGAAGACGAGGAGGGAGAAGAGAAGGAGAAATTGCCAAACCCGTTACGAGCAGACGAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGCAGGTGCATCGGCTCTTGCGTTTTCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTGGGAGTGTGGCGGCGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

201

Amino Acids

21.92

Weight (kDa)

4.95

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	50 - 189	5.3e-31	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030310)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275811
rosa_samantha	Rh6DG204400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	491
Acc65I	GGTACC	1 cut(s)	538
AccB1I	GGYRCC	3 cut(s)	4, 275, 538
AccII	CGCG	1 cut(s)	194
AciI	CCGC	4 cut(s)	156, 192, 595, 598
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	41, 390, 540
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	391
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	63, 105, 162
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	310, 345
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	288, 336
ApeKI	GCWGC	3 cut(s)	282, 497, 551
Asp718I	GGTACC	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	67, 337
AsuC2I	CCSGG	2 cut(s)	253, 383
AsuNHI	GCTAGC	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	3 cut(s)	4, 275, 538
BanII	GRGCYC	1 cut(s)	383
BbrPI	CACGTG	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	294, 509, 563
BccI	CCATC	2 cut(s)	199, 299
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 489, 523
BciT130I	CCWGG	3 cut(s)	65, 107, 164
BcnI	CCSGG	2 cut(s)	253, 383
BcoDI	GTCTC	2 cut(s)	310, 345
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	266, 548
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	491
BisI	GCNGC	6 cut(s)	156, 283, 498, 552, 596, 599
BlsI	GCNGC	6 cut(s)	157, 284, 499, 553, 597, 600
Bme1390I	CCNGG	5 cut(s)	65, 107, 164, 253, 383
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	67, 337
BmiI	GGNNCC	4 cut(s)	6, 169, 277, 540
BmrFI	CCNGG	5 cut(s)	65, 107, 164, 253, 383
BmrI	ACTGGG	2 cut(s)	136, 313
BmsI	GCATC	1 cut(s)	515
BmtI	GCTAGC	1 cut(s)	551
BmuI	ACTGGG	2 cut(s)	136, 313
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	2 cut(s)	253, 383
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	105, 163
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	142, 319
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	3 cut(s)	65, 107, 164
BseDI	CCNNGG	2 cut(s)	105, 163
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	142, 319
BseRI	GAGGAG	2 cut(s)	422, 470
BseXI	GCAGC	3 cut(s)	294, 509, 563
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	290, 338
BshNI	GGYRCC	3 cut(s)	4, 275, 538
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	4 cut(s)	252, 261, 273, 383
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	2 cut(s)	310, 345
BsnI	GGCC	2 cut(s)	290, 338
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	78, 383
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	4 cut(s)	156, 192, 595, 598
BspANI	GGCC	2 cut(s)	290, 338
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	6, 169, 277, 540
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	491
BspOI	GCTAGC	1 cut(s)	551
BspT107I	GGYRCC	3 cut(s)	4, 275, 538
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	142, 319
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	105, 163
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	65, 107, 164
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	3 cut(s)	341, 411, 459
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	280, 549
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	2 cut(s)	310, 345
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	3 cut(s)	65, 107, 164
BstSCI	CCNGG	5 cut(s)	63, 105, 162, 251, 381
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	294, 509, 563
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	290, 338
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	149, 531, 542
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	280, 549
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	67, 337
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	40, 389, 539
CviAII	CATG	3 cut(s)	55, 241, 286
CviQI	GTAC	3 cut(s)	40, 389, 539
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	341, 411, 459
EarI	CTCTTC	3 cut(s)	341, 411, 459
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	63, 105, 162
EcoT38I	GRGCYC	1 cut(s)	383
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	3 cut(s)	58, 244, 289
FaiI	YATR	6 cut(s)	56, 242, 287, 329, 563, 573
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FatI	CATG	3 cut(s)	54, 240, 285
Fnu4HI	GCNGC	6 cut(s)	156, 283, 498, 552, 596, 599
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	6 cut(s)	156, 283, 498, 552, 596, 599
FspBI	CTAG	2 cut(s)	266, 548
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	6 cut(s)	156, 283, 498, 552, 596, 599
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	290, 338
HapII	CCGG	4 cut(s)	252, 261, 273, 383
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	58, 244, 289
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	4 cut(s)	252, 261, 273, 383
Hpy166II	GTNNAC	2 cut(s)	313, 391
Hpy188I	TCNGA	2 cut(s)	183, 296
Hpy8I	GTNNAC	2 cut(s)	313, 391
Hpy99I	CGWCG	2 cut(s)	119, 179
HpyAV	CCTTC	2 cut(s)	415, 463
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	282, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	58, 244, 289
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	542
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	143, 167, 530
Lsp1109I	GCAGC	3 cut(s)	294, 509, 563
LweI	GCATC	1 cut(s)	515
MaeI	CTAG	2 cut(s)	266, 548
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	441, 489
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	4 cut(s)	358, 413, 428, 476
MhlI	GDGCHC	2 cut(s)	78, 383
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	428
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	80, 104, 325, 400, 403, 448, 451, 565, 573
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	3 cut(s)	200, 222, 234
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	4 cut(s)	252, 261, 273, 383
MspR9I	CCNGG	5 cut(s)	65, 107, 164, 253, 383
MvaI	CCWGG	3 cut(s)	65, 107, 164
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	503
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	253, 383
NdeII	GATC	1 cut(s)	183
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	3 cut(s)	58, 244, 289
NlaIV	GGNNCC	4 cut(s)	6, 169, 277, 540
PaeR7I	CTCGAG	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 515
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	6 cut(s)	157, 284, 499, 553, 597, 600
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	63, 105, 162
PspCI	CACGTG	1 cut(s)	394
PspGI	CCWGG	3 cut(s)	63, 105, 162
PspN4I	GGNNCC	4 cut(s)	6, 169, 277, 540
PspPI	GGNCC	2 cut(s)	67, 337
PspXI	VCTCGAGB	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	3 cut(s)	41, 390, 540
RsaNI	GTAC	3 cut(s)	40, 389, 539
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	200, 222, 234
SatI	GCNGC	6 cut(s)	156, 283, 498, 552, 596, 599
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	67, 337
ScrFI	CCNGG	5 cut(s)	65, 107, 164, 253, 383
SduI	GDGCHC	2 cut(s)	78, 383
SetI	ASST	7 cut(s)	66, 72, 96, 336, 396, 505, 584
SfaNI	GCATC	1 cut(s)	515
SfcI	CTRYAG	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	4 cut(s)	156, 192, 595, 598
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	266, 548
StyD4I	CCNGG	5 cut(s)	63, 105, 162, 251, 381
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	72, 123
TasI	AATT	1 cut(s)	428
TauI	GCSGC	3 cut(s)	158, 598, 601
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	200, 222, 234
Tru9I	TTAA	3 cut(s)	200, 222, 234
TscAI	CASTG	3 cut(s)	149, 531, 549
TseI	GCWGC	3 cut(s)	282, 497, 551
TspDTI	ATGAA	2 cut(s)	359, 550
TspGWI	ACGGA	2 cut(s)	13, 298
TspRI	CASTG	3 cut(s)	149, 531, 549
VpaK11BI	GGWCC	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	2 cut(s)	266, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.