RchiOBHm_Chr6g0276941

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030342
Physical Location & Seq
Reverse (-)
39283452 .. 39283949
498 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGGAAATTGCTTTAGGACTTGAAGCTTCTGGGCAGCAATTCATTTGGGTTGTCAAAAAAGATGAAAACAATGGTCATGAAAGTAGCGAGGATTGGTTGCCTCAAGGGTTTGAGAAGAAAGTTGAAGGCAAAGCACTAGTCATACGAGGGTGGGTTCCTCAAGTGCAAATTATTGAACACCTGGCAGTCGGCGGCTTTGTGACGCATTATGGGTGGAACTCTGTGATTGAAGCAATTTCTGATGGAGTTCCGATGGCTATGTGGCCAGCGCTTGCTGACCAATTTTACAATGAGAAGCTGGTGATCCAAATACTTGGCATTGGGGTTGGTGTTGGTGTTTCAAAATGGGCTAGATTTGGAGGGGAAAGAGTGAAGAGTGAAGCTATAGAGACGGTGGTGAAACAGATTATGGTGGGTGAAAAATCAGAGGAAATGAGAAGCAGAGCCAAGAAACTTAGGGAAATGGCAAGAAATAGTGTGAAGGAAGGTGGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

165

Amino Acids

18.28

Weight (kDa)

5.97

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 1 - 111 5.6e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030342)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0276941
rosa_multiflora Rmu_sc0003882.1_g000022

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 270
AgsI TTSAA 5 cut(s) 23, 125, 176, 230, 342
AhlI ACTAGT 1 cut(s) 136
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 26, 298, 383
AluI AGCT 3 cut(s) 26, 298, 383
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 298
Aor51HI AGCGCT 1 cut(s) 270
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 34
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AspLEI GCGC 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 313, 409, 428
BalI TGGCCA 1 cut(s) 265
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 236, 247
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 383
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 2 cut(s) 137, 351
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 2 cut(s) 35, 193
BlsI GCNGC 2 cut(s) 36, 194
Bme1390I CCNGG 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 87, 144
BseBI CCWGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 303, 491
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 265
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 298
BssMI GATC 2 cut(s) 303, 491
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 267, 273
BstDEI CTNAG 1 cut(s) 455
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 306, 494
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 303, 491
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 267, 273
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 271
CseI GACGC 1 cut(s) 211
CviAII CATG 1 cut(s) 77
CviJI RGCY 8 cut(s) 26, 195, 257, 265, 298, 350, 383, 446
CviKI_1 RGCY 8 cut(s) 26, 195, 257, 265, 298, 350, 383, 446
DdeI CTNAG 1 cut(s) 455
DpnI GATC 2 cut(s) 305, 493
DpnII GATC 2 cut(s) 303, 491
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco47III AGCGCT 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 1 cut(s) 80
FaiI YATR 7 cut(s) 78, 143, 210, 260, 386, 410, 496
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 35, 193
Fsp4HI GCNGC 2 cut(s) 35, 193
FspBI CTAG 2 cut(s) 137, 351
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 35, 193
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 265
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 24
HphI GGTGA 3 cut(s) 313, 409, 428
Hpy188I TCNGA 3 cut(s) 241, 252, 427
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 119, 475, 479
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 303, 491
LpnPI CCDG 5 cut(s) 15, 167, 194, 279, 284
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 2 cut(s) 137, 351
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 305, 493
MboI GATC 2 cut(s) 303, 491
MboII GAAGA 2 cut(s) 127, 385
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 5 cut(s) 6, 38, 168, 234, 281
MluNI TGGCCA 1 cut(s) 265
MnlI CCTC 6 cut(s) 82, 111, 140, 168, 353, 421
Mox20I TGGCCA 1 cut(s) 265
MscI TGGCCA 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 265
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
NdeII GATC 2 cut(s) 303, 491
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 199
PagI TCATGA 1 cut(s) 76
PkrI GCNGC 2 cut(s) 36, 194
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 156
SatI GCNGC 2 cut(s) 35, 193
Sau3AI GATC 2 cut(s) 303, 491
ScrFI CCNGG 1 cut(s) 182
SetI ASST 5 cut(s) 28, 183, 300, 385, 490
SfcI CTRYAG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 102, 159
SmoI CTYRAG 2 cut(s) 102, 159
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 5 cut(s) 6, 38, 168, 234, 281
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 137, 351
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 394
TasI AATT 5 cut(s) 6, 38, 168, 234, 281
TauI GCSGC 1 cut(s) 195
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 31, 78, 93
XspI CTAG 2 cut(s) 137, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.