RchiOBHm_Chr6g0281921

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
45271468 .. 45273886
2419 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGATATTCCCAATTATTCATCAAGCGACTTAGATCACAACTTGTACCCAGATGGCTCTGTTGGACTTGGCAAAAACCCTGATGTACCAAGCAGCAATGTTGATTGTTTGGCAAAGGAAGTGCAAGAAGGTCCATCACCTTCAGAGCATAAATCAATTAAAGAGAAAAAGAAGGCAAAGCGTGCAAGAAACAAGAAGCTTGTACAAGAAGAGAAAGAGTCAGCATGA

Protein Analysis

75

Amino Acids

8.25

Weight (kDa)

6.72

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025093)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0281921
rosa_multiflora Rmu_sc0002807.1_g000002 Rmu_sc0002985.1_g000024

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 3 cut(s) 47, 87, 204
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 129
AvaII GGWCC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 47, 142
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 202
BssMI GATC 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 31
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 3 cut(s) 46, 86, 203
CviAII CATG 1 cut(s) 225
CviJI RGCY 2 cut(s) 57, 199
CviKI_1 RGCY 2 cut(s) 57, 199
CviQI GTAC 3 cut(s) 46, 86, 203
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 126
FaeI CATG 1 cut(s) 228
FaiI YATR 2 cut(s) 150, 226
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 122, 150, 166
HpyCH4V TGCA 2 cut(s) 124, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 31
Hsp92II CATG 1 cut(s) 228
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 63, 93
Lsp1109I GCAGC 1 cut(s) 105
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 221
MluCI AATT 2 cut(s) 13, 156
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 43
MseI TTAA 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 228
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 3 cut(s) 47, 87, 204
RsaNI GTAC 3 cut(s) 46, 86, 203
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 227
SetI ASST 3 cut(s) 133, 142, 201
SinI GGWCC 1 cut(s) 131
Sse9I AATT 2 cut(s) 13, 156
TasI AATT 2 cut(s) 13, 156
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 9
VpaK11BI GGWCC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.