Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002985.1

Orthogroup ID

OG0025093

Physical Location & Seq

Genomic Coordinates Forward (+)

86806 .. 87253

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002985.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgtcagctgacgtgatggttcttaaagaagggcgcatcatacaagcaggaaaatttgatgatcttttacaggcaggaactgatttaaagacactagtctcagctcacaatgatgaaattgaagctatggatattcccaattattcatcaagcaacttagatcacaacttgtgtccagatggctctgttggacatggcaaaaaccctgttgtaccaagcagcagtgttgattgtttggcaaaggaagtgcaagaaggtccatcaccttcagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

91

Amino Acids

9.62

Weight (kDa)

4.47

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025093)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0281921
rosa_multiflora	Rmu_sc0002807.1_g000002 Rmu_sc0002985.1_g000024

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	13
AluBI	AGCT	3 cut(s)	8, 104, 125
AluI	AGCT	3 cut(s)	8, 104, 125
Alw26I	GTCTC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	3 cut(s)	10, 173, 268
BcoDI	GTCTC	1 cut(s)	103
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	257
BmsI	GCATC	1 cut(s)	45
BoxI	GACNNNNGTC	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	61, 160
BspCNI	CTCAG	1 cut(s)	113
BssMI	GATC	2 cut(s)	61, 160
BstDEI	CTNAG	2 cut(s)	100, 157
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	2 cut(s)	64, 163
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	61, 160
BstPAI	GACNNNNGTC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	4 cut(s)	8, 104, 125, 183
CviKI_1	RGCY	4 cut(s)	8, 104, 125, 183
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	100, 157
DpnI	GATC	2 cut(s)	63, 162
DpnII	GATC	2 cut(s)	61, 160
DraI	TTTAAA	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	252
FaeI	CATG	1 cut(s)	197
FaiI	YATR	3 cut(s)	41, 128, 195
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	23, 248, 276
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	100, 157
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	61, 160
LpnPI	CCDG	5 cut(s)	33, 56, 60, 189, 219
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	63, 162
MboI	GATC	2 cut(s)	61, 160
MluCI	AATT	3 cut(s)	53, 117, 139
MmeI	TCCRAC	1 cut(s)	169
MseI	TTAA	2 cut(s)	24, 86
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	8
NdeII	GATC	2 cut(s)	61, 160
NlaIII	CATG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	221
PshAI	GACNNNNGTC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	24, 86
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	61, 160
Sau96I	GGNCC	1 cut(s)	257
SetI	ASST	6 cut(s)	10, 15, 106, 127, 259, 268
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	111
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	3 cut(s)	53, 117, 139
SspMI	CTAG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	15
TasI	AATT	3 cut(s)	53, 117, 139
Tru1I	TTAA	2 cut(s)	24, 86
Tru9I	TTAA	2 cut(s)	24, 86
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	129, 135
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	53
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.