RchiOBHm_Chr6g0284261
ERF Family

Rhodanese Cell cycle control phosphatase superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
47536825 .. 47539047
2223 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGATGCTGATGGTACTCGTTCCAAAGCAATTGCAAGATCCTTGAGAAAGCTGGGGCTTAAGATGCCTTACTTGCTTCAAGGTGGCTTTCGATCTTGGGTGAAAGATGGTCTTCGAATTAAAGAACTCAAACCTGAGACAACACTTACCATACTCAATGAGCAGTCGGTTGAAATTGAGAAGGATGTGGTGAGGGAGAGATATATAGTGTTAATTAATTGGAATCACCTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

9.07

Weight (kDa)

9.69

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030366)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284261
rosa_samantha Rh2BG365300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 33
AfaI GTAC 1 cut(s) 16
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 80, 173
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 33
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 112, 202, 218
AsuII TTCGAA 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 2 cut(s) 5, 101
BcoDI GTCTC 1 cut(s) 131
BfrI CTTAAG 1 cut(s) 59
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 64
BseGI GGATG 2 cut(s) 10, 190
BseMII CTCAG 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 38, 92
BspCNI CTCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 59
BssMI GATC 2 cut(s) 38, 92
BstAFI CTTAAG 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 10, 190
BstKTI GATC 2 cut(s) 41, 95
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 38, 92
BstMWI GCNNNNNNNGC 2 cut(s) 64, 73
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BtsCI GGATG 2 cut(s) 10, 190
Csp6I GTAC 1 cut(s) 15
CviJI RGCY 3 cut(s) 52, 58, 87
CviKI_1 RGCY 3 cut(s) 52, 58, 87
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 40, 94
DpnII GATC 2 cut(s) 38, 92
FaiI YATR 3 cut(s) 152, 204, 206
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FokI GGATG 2 cut(s) 17, 197
GsaI CCCAGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 223
HphI GGTGA 3 cut(s) 112, 202, 218
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 73
HpyF3I CTNAG 1 cut(s) 135
Kzo9I GATC 2 cut(s) 38, 92
LpnPI CCDG 2 cut(s) 38, 147
LweI GCATC 1 cut(s) 54
MalI GATC 2 cut(s) 40, 94
MboI GATC 2 cut(s) 38, 92
MboII GAAGA 1 cut(s) 104
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 38
MluCI AATT 6 cut(s) 30, 117, 174, 213, 217, 232
MnlI CCTC 1 cut(s) 186
MseI TTAA 4 cut(s) 60, 120, 212, 216
MspCI CTTAAG 1 cut(s) 59
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 64, 73
NdeII GATC 2 cut(s) 38, 92
NspV TTCGAA 1 cut(s) 115
PacI TTAATTAA 1 cut(s) 216
PfeI GAWTC 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 60, 120, 212, 216
Sau3AI GATC 2 cut(s) 38, 92
SetI ASST 4 cut(s) 54, 85, 136, 231
SfaNI GCATC 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 115
SgeI CNNG 8 cut(s) 30, 48, 55, 65, 85, 92, 108, 146
SmlI CTYRAG 2 cut(s) 43, 59
SmoI CTYRAG 2 cut(s) 43, 59
Sse9I AATT 6 cut(s) 30, 117, 174, 213, 217, 232
TaqI TCGA 2 cut(s) 91, 115
TasI AATT 6 cut(s) 30, 117, 174, 213, 217, 232
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 4 cut(s) 60, 120, 212, 216
Tru9I TTAA 4 cut(s) 60, 120, 212, 216
Vha464I CTTAAG 1 cut(s) 59
VspI ATTAAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.