Rh2BG365300
ERF Family

Rhodanese Cell cycle control phosphatase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0030366
Physical Location & Seq
Forward (+)
50746977 .. 50765198
18222 bp
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UTR
Exon/CDS
Intron
Rh2BG365300.1

Sequence Viewer

Length: 462 bp
ATGGGAAAGCTATTGTTGGGGAGGCCACCATTGAGGTCCAAGGTCATAATTATGGATGCTGATGGTACTCGTTCCAAAGCAATTGCAAGATCCTTGAGAAAGCTGGGGCTTAAGATGCCTTTCTTGCTTCAAGGTGGCTTTCGATCTTGGGTGAAAGATGGTCTTCGAATTAAAGAACTCAAACCTGAGACAACACTTACCATACTCAATGAGACTTTGTCTACACCAGTCCTCACACCAAGTGGTGTGCTAAAATCGAAAACTCCGCCTAGCCGTGTTGGTTCTAATCCTAGTGATTCAGCTAGCCATGTAGAGATGAATGAATGGGATGCACCAGTGTCAAGCAATACTCTATCCTCAGAGTTAGAGATGAGTATCGTACCAGCTAGTGTGGTGCCAAAGGCAGAAGCCTCAGTAGTCTCTCCACCGGTGATTGCATACAGTTGTCCACGTCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhodanese

Protein Analysis

153

Amino Acids

16.43

Weight (kDa)

9.86

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030366)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0284261
rosa_samantha Rh2BG365300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 221
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 2 cut(s) 67, 381
AflII CTTAAG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 427
AgsI TTSAA 1 cut(s) 131
AjiI CACGTC 1 cut(s) 452
AluBI AGCT 4 cut(s) 10, 103, 302, 386
AluI AGCT 4 cut(s) 10, 103, 302, 386
Alw26I GTCTC 3 cut(s) 182, 206, 424
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 23
AsiGI ACCGGT 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 163, 442
AsuII TTCGAA 1 cut(s) 166
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 155, 446
BccI CCATC 2 cut(s) 56, 152
BceAI ACGGC 1 cut(s) 258
BcoDI GTCTC 3 cut(s) 182, 206, 424
BfaI CTAG 4 cut(s) 270, 291, 303, 387
BfrI CTTAAG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 3 cut(s) 46, 105, 319
BmtI GCTAGC 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 155, 446
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 2 cut(s) 227, 335
Bse8I GATNNNNATC 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 61, 334
BseJI GATNNNNATC 1 cut(s) 374
BseMII CTCAG 3 cut(s) 177, 372, 426
BseNI ACTGG 2 cut(s) 227, 335
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 427
BsiSI CCGG 1 cut(s) 428
BsmAI GTCTC 3 cut(s) 182, 206, 424
BsnI GGCC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 166
Bsp143I GATC 2 cut(s) 89, 143
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 3 cut(s) 178, 371, 425
BspLI GGNNCC 1 cut(s) 396
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 2 cut(s) 227, 335
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 89, 143
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 443
BstAFI CTTAAG 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 186, 358, 412
BstF5I GGATG 2 cut(s) 61, 334
BstKTI GATC 2 cut(s) 92, 146
BstMAI GTCTC 3 cut(s) 182, 206, 424
BstMBI GATC 2 cut(s) 89, 143
BstMWI GCNNNNNNNGC 2 cut(s) 115, 124
BstV2I GAAGAC 2 cut(s) 155, 446
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 25
BtrI CACGTC 1 cut(s) 452
BtsCI GGATG 2 cut(s) 61, 334
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 2 cut(s) 66, 380
CspAI ACCGGT 1 cut(s) 427
CviAII CATG 1 cut(s) 308
CviQI GTAC 2 cut(s) 66, 380
DdeI CTNAG 3 cut(s) 186, 358, 412
DpnI GATC 2 cut(s) 91, 145
DpnII GATC 2 cut(s) 89, 143
DraIII CACNNNGTG 1 cut(s) 242
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 311
FaiI YATR 5 cut(s) 47, 53, 203, 309, 439
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 221
FokI GGATG 2 cut(s) 68, 341
FspBI CTAG 4 cut(s) 270, 291, 303, 387
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 428
Hin1II CATG 1 cut(s) 311
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 163, 442
Hpy166II GTNNAC 2 cut(s) 222, 449
Hpy188I TCNGA 1 cut(s) 361
Hpy8I GTNNAC 2 cut(s) 222, 449
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 3 cut(s) 86, 332, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 124
HpyF3I CTNAG 3 cut(s) 186, 358, 412
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 1 cut(s) 311
Kzo9I GATC 2 cut(s) 89, 143
LpnPI CCDG 6 cut(s) 89, 198, 240, 348, 396, 441
LweI GCATC 3 cut(s) 46, 105, 319
MaeI CTAG 4 cut(s) 270, 291, 303, 387
MaeII ACGT 1 cut(s) 451
MalI GATC 2 cut(s) 91, 145
MboI GATC 2 cut(s) 89, 143
MboII GAAGA 2 cut(s) 155, 446
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 89
MluCI AATT 3 cut(s) 48, 81, 168
MnlI CCTC 5 cut(s) 15, 27, 242, 367, 421
MseI TTAA 2 cut(s) 111, 171
MslI CAYNNNNRTG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 115, 124
NdeII GATC 2 cut(s) 89, 143
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 396
NspV TTCGAA 1 cut(s) 166
PfeI GAWTC 1 cut(s) 296
PflFI GACNNNGTC 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 217
RsaI GTAC 2 cut(s) 67, 381
RsaNI GTAC 2 cut(s) 66, 380
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 111, 171
Sau3AI GATC 2 cut(s) 89, 143
Sau96I GGNCC 1 cut(s) 36
SetI ASST 9 cut(s) 12, 38, 45, 105, 136, 187, 304, 388, 454
SfaNI GCATC 3 cut(s) 46, 105, 319
SfuI TTCGAA 1 cut(s) 166
SgrAI CRCCGGYG 1 cut(s) 427
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 94, 110
SmoI CTYRAG 2 cut(s) 94, 110
Sse9I AATT 3 cut(s) 48, 81, 168
SsiI CCGC 1 cut(s) 266
SspMI CTAG 4 cut(s) 270, 291, 303, 387
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 454
TaqI TCGA 3 cut(s) 142, 166, 257
TasI AATT 3 cut(s) 48, 81, 168
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 111, 171
Tru9I TTAA 2 cut(s) 111, 171
TscAI CASTG 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 332, 336
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 1 cut(s) 217
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 4 cut(s) 270, 291, 303, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.