RchiOBHm_Chr6g0288681

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025092
Physical Location & Seq
Forward (+)
51870385 .. 51870796
412 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGCCACTATTATCCAATTTCCCCGAGCCTGAACTGACTCTAGGCACAATCAAACATTCAGATCCCTCATTTCTTACCTTAGTCCTGCAAGACGAGATTGGAGGGCTCCAAGTTCTCAATAAGGATCAATGGGTTGACGTGTCGCCAGTGGATGGAGCATTTGTAGCAAATCTTGGTGACCTTATGCAGGTACTTCTCTCTCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

69

Amino Acids

7.58

Weight (kDa)

4.12

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 8 - 65 4e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025092)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0288681
rosa_samantha Rh6CG322100 Rh6DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 2 cut(s) 56, 132
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 152, 187
AflIII ACRYGT 1 cut(s) 138
AjiI CACGTC 1 cut(s) 139
AlwI GGATC 2 cut(s) 56, 132
Ama87I CYCGRG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 23
BanII GRGCYC 1 cut(s) 108
BccI CCATC 1 cut(s) 146
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 187
Bse1I ACTGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 152, 187
BseNI ACTGG 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 152, 187
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 61, 124
BspLI GGNNCC 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 2 cut(s) 56, 132
BsrI ACTGG 1 cut(s) 146
BssMI GATC 2 cut(s) 61, 124
BstDEI CTNAG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 64, 127
BstMBI GATC 2 cut(s) 61, 124
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 191
CviJI RGCY 2 cut(s) 28, 106
CviKI_1 RGCY 2 cut(s) 28, 106
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 79
DpnI GATC 2 cut(s) 63, 126
DpnII GATC 2 cut(s) 61, 124
Eco24I GRGCYC 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 108
FaiI YATR 1 cut(s) 185
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 108
FspBI CTAG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 88, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 138
Kzo9I GATC 2 cut(s) 61, 124
LmnI GCTCC 2 cut(s) 111, 155
LpnPI CCDG 4 cut(s) 42, 98, 159, 173
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 63, 126
MboI GATC 2 cut(s) 61, 124
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 2 cut(s) 76, 95
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 2 cut(s) 61, 124
NlaIV GGNNCC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 152
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspEI GGTNACC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 61, 124
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 80, 141, 183, 192
Sse9I AATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 41
TaiI ACGT 1 cut(s) 141
TasI AATT 1 cut(s) 16
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspRI CASTG 1 cut(s) 153
Van91I CCANNNNNTGG 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 185
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.