Rh6DG307900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0025092
Physical Location & Seq
Forward (+)
50868235 .. 50868552
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG307900.1

Sequence Viewer

Length: 318 bp
ATGAGTGAGTATATCAAAAACTTGATAGAACTTCAGAAAGTGCTACCCGAATTACTATTAGAAGCCTTAGGGCTTAGCAAGGATCACCAGGCACACATGGGGTGCTTGAAATCTTTCTCATTGTCATGCCACTATTATCCAACTTGCCCTGAGCCCGATTTGAATCTAGGAACAATCAAACATTCAGACCCCTCATTTCTTACCTTAGTTCTGCAGGACGAGATTGGGGGCCTCCAAGTCTTCCATAAAGATCAATGGGTTGATGTGCCACCAGTGAATGGAGCTTTTGTAGCAAATCTTGGTGACTTATGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

5.12

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 41 - 103 1.8e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025092)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0288681
rosa_samantha Rh6CG322100 Rh6DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 278
AclWI GGATC 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 109, 163
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 77, 314
AxyI CCTNAGG 1 cut(s) 67
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 303
BlpI GCTNAGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 272
Bse21I CCTNAGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 272
BshFI GGCC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 82, 250
Bsp1720I GCTNAGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 272
BssMI GATC 2 cut(s) 82, 250
Bst2UI CCWGG 1 cut(s) 89
BstDEI CTNAG 4 cut(s) 67, 74, 150, 205
BstKTI GATC 2 cut(s) 85, 253
BstMBI GATC 2 cut(s) 82, 250
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 279
BveI ACCTGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 229
CviAII CATG 2 cut(s) 97, 126
CviJI RGCY 5 cut(s) 65, 73, 154, 231, 284
CviKI_1 RGCY 5 cut(s) 65, 73, 154, 231, 284
DdeI CTNAG 4 cut(s) 67, 74, 150, 205
DpnI GATC 2 cut(s) 84, 252
DpnII GATC 2 cut(s) 82, 250
Eco24I GRGCYC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 17
Eco81I CCTNAGG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 2 cut(s) 100, 129
FaiI YATR 5 cut(s) 12, 98, 127, 246, 310
FatI CATG 2 cut(s) 96, 125
FriOI GRGCYC 1 cut(s) 156
FspBI CTAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 2 cut(s) 100, 129
HinfI GANTC 1 cut(s) 163
HphI GGTGA 2 cut(s) 77, 314
Hpy188I TCNGA 2 cut(s) 36, 187
HpyCH4V TGCA 2 cut(s) 214, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 4 cut(s) 67, 74, 150, 205
Hsp92II CATG 2 cut(s) 100, 129
Kzo9I GATC 2 cut(s) 82, 250
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 6 cut(s) 74, 101, 162, 200, 285, 298
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 84, 252
MboI GATC 2 cut(s) 82, 250
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 2 cut(s) 202, 242
MroXI GAANNNNTTC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 2 cut(s) 82, 250
NlaIII CATG 2 cut(s) 100, 129
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PstI CTGCAG 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 124
Sau3AI GATC 2 cut(s) 82, 250
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 206, 286, 317
SfcI CTRYAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 124
Sse9I AATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 87
TasI AATT 1 cut(s) 50
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspRI CASTG 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.