RchiOBHm_Chr6g0302281

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030323
Physical Location & Seq
Forward (+)
62430956 .. 62432404
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGAATGGGACTTTTGTAGGAGCTTTAAGAACTTGTGCTCGGATCAAAATAACCAACCCGAATCCAGAATGGGTTGTGGAGACTATGCCACTGGCTAGAGTCATGAGTGATATGACCAAAGGCGTAGCTACACATGGGCTCTCTCCGCCATTAGATATGACATTGCTCCCAAATGGTGAAGTGTTGATTATCAACGGTGGAGCTGCAGGGACAGCGGGATGGGAAATCGGCCGTAAACCTATTTTGAATCCAGTTCTTCACAGACCTGAAAATGTAATTGGGTCACGTTTTAAAGTACAAAATCCAAGCACAGTACCACGGATGTACCATTCTAGGGCATTATTGCTAAGGGATAGTAGAGTACTTGTTGGGGGTAGCAATCCACATAAGTATTATAGGTTCATAAATGTGCTTTATCTAACTGAGCTAAGCTTAGAGGCATTTCACCCTTCTTACTTGGACGCAAAATACACATATTTACGTCCGACAATCATAGGACTCGGATCTCAATTAAGCTACACTCGAGTATGGAGAAAAGATAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

182

Amino Acids

20.3

Weight (kDa)

9.94

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 3 - 39 1.7e-10 Glyoxal oxidase N-terminus
Glyoxal_oxid_N PF07250 52 - 152 8.7e-42 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030323)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0302281 RchiOBHm_Chr6g0302341

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 215
AclWI GGATC 2 cut(s) 50, 511
AcoI YGGCCR 1 cut(s) 229
AfaI GTAC 4 cut(s) 297, 315, 326, 363
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 6 cut(s) 23, 128, 203, 427, 432, 516
AluI AGCT 6 cut(s) 23, 128, 203, 427, 432, 516
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 50, 511
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 188, 437
AvaI CYCGRG 1 cut(s) 522
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 2 cut(s) 96, 333
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 204
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 347
Bpu1102I GCTNAGC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 96, 251
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 224, 327
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 96, 251
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 522
BslFI GGGAC 2 cut(s) 22, 223
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 22, 223
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 40, 141
Bsp143I GATC 2 cut(s) 42, 503
Bsp1720I GCTNAGC 1 cut(s) 428
BspACI CCGC 2 cut(s) 146, 215
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 2 cut(s) 50, 511
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 2 cut(s) 96, 251
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 2 cut(s) 42, 503
Bst4CI ACNGT 2 cut(s) 197, 313
BstDEI CTNAG 4 cut(s) 347, 423, 428, 433
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 224, 327
BstKTI GATC 2 cut(s) 45, 506
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 42, 503
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 145, 212
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 224, 327
BtsIMutI CAGTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 102
CseI GACGC 1 cut(s) 470
Csp6I GTAC 4 cut(s) 296, 314, 325, 362
CviAII CATG 2 cut(s) 103, 134
CviJI RGCY 9 cut(s) 23, 95, 128, 139, 203, 231, 427, 432, 516
CviKI_1 RGCY 9 cut(s) 23, 95, 128, 139, 203, 231, 427, 432, 516
CviQI GTAC 4 cut(s) 296, 314, 325, 362
DdeI CTNAG 4 cut(s) 347, 423, 428, 433
DpnI GATC 2 cut(s) 44, 505
DpnII GATC 2 cut(s) 42, 503
DraI TTTAAA 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
EciI GGCGGA 1 cut(s) 135
EclXI CGGCCG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 141
Eco52I CGGCCG 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 2 cut(s) 106, 137
FaqI GGGAC 2 cut(s) 22, 223
FatI CATG 2 cut(s) 102, 133
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 231, 334
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 96, 333
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 1 cut(s) 231
HgaI GACGC 1 cut(s) 470
Hin1II CATG 2 cut(s) 106, 137
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 4 cut(s) 61, 99, 247, 498
HphI GGTGA 2 cut(s) 188, 437
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 42, 486, 503
Hpy188III TCNNGA 2 cut(s) 65, 103
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 2 cut(s) 197, 313
HpyCH4IV ACGT 2 cut(s) 286, 481
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 212
HpyF3I CTNAG 4 cut(s) 347, 423, 428, 433
HpySE526I ACGT 2 cut(s) 286, 481
Hsp92II CATG 2 cut(s) 106, 137
Kzo9I GATC 2 cut(s) 42, 503
LmnI GCTCC 3 cut(s) 20, 171, 200
LpnPI CCDG 5 cut(s) 77, 78, 192, 264, 279
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 2 cut(s) 96, 333
MaeII ACGT 2 cut(s) 286, 481
MaeIII GTNAC 1 cut(s) 282
MalI GATC 2 cut(s) 44, 505
MboI GATC 2 cut(s) 42, 503
MboII GAAGA 1 cut(s) 248
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 40, 141
MluCI AATT 2 cut(s) 276, 509
MlyI GAGTC 2 cut(s) 108, 492
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 1 cut(s) 430
MseI TTAA 3 cut(s) 26, 291, 512
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 145, 212
NdeII GATC 2 cut(s) 42, 503
NlaIII CATG 2 cut(s) 106, 137
NmuCI GTSAC 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 522
PagI TCATGA 1 cut(s) 102
PfeI GAWTC 2 cut(s) 61, 247
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 2 cut(s) 107, 492
PpsI GAGTC 2 cut(s) 107, 492
PspXI VCTCGAGB 1 cut(s) 522
PsrI GAACNNNNNNTAC 2 cut(s) 383, 415
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 4 cut(s) 297, 315, 326, 363
RsaNI GTAC 4 cut(s) 296, 314, 325, 362
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 26, 291, 512
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 42, 503
ScaI AGTACT 1 cut(s) 363
SchI GAGTC 2 cut(s) 108, 492
SduI GDGCHC 2 cut(s) 40, 141
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 522
SlaI CTCGAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 2 cut(s) 276, 509
SsiI CCGC 2 cut(s) 146, 215
SspMI CTAG 2 cut(s) 96, 333
TaaI ACNGT 2 cut(s) 197, 313
TaiI ACGT 2 cut(s) 289, 484
TaqI TCGA 1 cut(s) 523
TasI AATT 2 cut(s) 276, 509
TatI WGTACW 2 cut(s) 295, 361
TfiI GAWTC 2 cut(s) 61, 247
Tru1I TTAA 3 cut(s) 26, 291, 512
Tru9I TTAA 3 cut(s) 26, 291, 512
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 2 cut(s) 17, 391
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 522
XspI CTAG 2 cut(s) 96, 333
ZrmI AGTACT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.