RchiOBHm_Chr6g0302341

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030323
Physical Location & Seq
Forward (+)
62479371 .. 62479673
303 bp
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UTR
Exon/CDS
Intron
PRQ27160

Sequence Viewer

Length: 303 bp
ATGCTCCCAAATGGTGAAGTGCTGATTATTAACTGTGGAACTGCAGGGATAGCGGGCTGGGAAATCGGCAGTGAACCTGTTTTGAATCCAGTTCTTTATAGACTTGACATTGTAATCGGCTCACGTTTTGAAGTACAAAATCCGAGCACCGTACCACAGATGTACCATTCCACGACATTATTGCTAAGGCATGGTAGAGTACTTATTGGGAGTAGCAATCCACACAAGTATTATAGGTTCATAAACGTGCTTTACCCAATTGACCTAAGCTTAGAGGCATTTCACCCTTCTTCTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

100

Amino Acids

11.2

Weight (kDa)

6.38

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 97 2.6e-35 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030323)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0302281 RchiOBHm_Chr6g0302341

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AfaI GTAC 4 cut(s) 135, 153, 164, 201
AgsI TTSAA 2 cut(s) 85, 131
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw21I GWGCWC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 26, 275
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
Bbv12I GWGCWC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BfmI CTRYAG 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 185, 266
Bse1I ACTGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 149
BspACI CCGC 1 cut(s) 53
BspMAI CTGCAG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 35, 151
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 185, 266, 271
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 55
Csp6I GTAC 4 cut(s) 134, 152, 163, 200
CviAII CATG 1 cut(s) 191
CviJI RGCY 3 cut(s) 57, 120, 270
CviKI_1 RGCY 3 cut(s) 57, 120, 270
CviQI GTAC 4 cut(s) 134, 152, 163, 200
DdeI CTNAG 3 cut(s) 185, 266, 271
FaeI CATG 1 cut(s) 194
FaiI YATR 4 cut(s) 99, 192, 234, 242
FatI CATG 1 cut(s) 190
FauI CCCGC 1 cut(s) 46
GsaI CCCAGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 85
HphI GGTGA 2 cut(s) 26, 275
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 35, 151
HpyCH4IV ACGT 2 cut(s) 124, 246
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 185, 266, 271
HpySE526I ACGT 2 cut(s) 124, 246
Hsp92II CATG 1 cut(s) 194
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 30, 43, 90, 102
MaeII ACGT 2 cut(s) 124, 246
MboII GAAGA 1 cut(s) 282
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 1 cut(s) 258
MnlI CCTC 1 cut(s) 268
MseI TTAA 2 cut(s) 30, 301
MslI CAYNNNNRTG 1 cut(s) 245
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 194
PfeI GAWTC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 57
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 4 cut(s) 135, 153, 164, 201
RsaNI GTAC 4 cut(s) 134, 152, 163, 200
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 30, 301
ScaI AGTACT 1 cut(s) 201
SduI GDGCHC 1 cut(s) 149
SetI ASST 6 cut(s) 79, 127, 239, 249, 267, 272
SfcI CTRYAG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 53
TaaI ACNGT 2 cut(s) 35, 151
TaiI ACGT 2 cut(s) 127, 249
TasI AATT 1 cut(s) 258
TatI WGTACW 2 cut(s) 133, 199
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 30, 301
Tru9I TTAA 2 cut(s) 30, 301
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 229
TspRI CASTG 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.