RchiOBHm_Chr6g0308681

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
66742299 .. 66742791
493 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 150 bp
ATGGTCACCCCAATTACAGTACATCCTGAAGATGCTTTGATTCGACATATACATGCATTTGCTCATCTTTTCCCTTCGACCACGGGTTTCTCCCACTGGGTTTACCGGGCAAGGTTTTGGTGTAGCAACTCTAATGTATCCCTCTCGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.64

Weight (kDa)

8.07

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0025094)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308681
rosa_multiflora Rmu_sc0000547.1_g000031
rosa_roxburghii Rroxscaffold_7G00185830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 148
BcnI CCSGG 1 cut(s) 107
BfuI GTATCC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 106
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 56
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 105
BsuI GTATCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 94
Csp6I GTAC 1 cut(s) 20
CviAII CATG 1 cut(s) 53
CviQI GTAC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 48, 50, 54
FatI CATG 1 cut(s) 52
FokI GGATG 1 cut(s) 9
HapII CCGG 1 cut(s) 106
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 56
Hsp92II CATG 1 cut(s) 56
LpnPI CCDG 3 cut(s) 39, 82, 119
LweI GCATC 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 1 cut(s) 41
MluCI AATT 1 cut(s) 12
Mph1103I ATGCAT 1 cut(s) 58
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 107
NciI CCSGG 1 cut(s) 107
NlaIII CATG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 1 cut(s) 56
PfeI GAWTC 1 cut(s) 40
PspEI GGTNACC 1 cut(s) 4
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 107
SetI ASST 1 cut(s) 116
SfaNI GCATC 1 cut(s) 22
SgeI CNNG 8 cut(s) 38, 65, 94, 96, 109, 118, 119, 123
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 43, 77
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspRI CASTG 1 cut(s) 101
XceI RCATGY 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.