Rroxscaffold_7G00185830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0025094
Physical Location & Seq
Forward (+)
25274416 .. 25288875
14460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185830.1

Sequence Viewer

Length: 615 bp
ATGTACCTTCTGCCCGATGAAGGATATGTTAGTGTTCTAGTTCTAAGGATCACGAGTGTAAGAGATGTTAAGTTTGGTGATACGGTCCTCATGACCGAATGGAATTCAGGAGGTGGTTGTGTTACCACCAAGTGTAGTGGTGAGGTATTACCACCAAGTCTTTGTGGTGAGGATGACAAGTGTGGTGATGCGAGTAGGTCCCTAGAGCACTGGACGCGATCTCGGCAAATCGAAATCGGGCATTTGAAAAACGAAGGGCCCGAGGGAAAACATATAAAATCCATTAGGTCTTATCCGGATGCAAATAGGGTAATTGGAAAATTAGAATATCATCACTTGTATTTGAATTTCAATACTTGCAAGGGAGCTAGTGAAAGGAAGCCAATCCTCGTGGGTTTGACAACCTTTCTTAAATCCCTATACTATTACTTGTACCCCTTATACTTGAGGGTGGCTATTTGGCTAACAGTCACCCACTTACTGCATCTAGAAGATGCTTTGATTCGACATATATATGCATTTTTGCTCATCTTTTCCCTTCGACCACAGGTTTCTCCCACTGGGTTTACGGGCAAAGGGTTTTGGTGTAGCAACTCTAATGCATCCTTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

8.48

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025094)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308681
rosa_multiflora Rmu_sc0000547.1_g000031
rosa_roxburghii Rroxscaffold_7G00185830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 295
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 103, 346
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 2 cut(s) 5, 434
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 247, 346, 352
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 1 cut(s) 257
ApaI GGGCCC 1 cut(s) 261
ApoI RAATTY 2 cut(s) 103, 346
AspS9I GGNCC 4 cut(s) 85, 198, 257, 258
AsuHPI GGTGA 5 cut(s) 89, 152, 179, 197, 463
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 2 cut(s) 85, 198
BaeGI GKGCMC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 2 cut(s) 52, 389
Bbv12I GWGCWC 1 cut(s) 210
BcgI CGANNNNNNTGC 1 cut(s) 591
BfaI CTAG 4 cut(s) 38, 203, 369, 488
Bme18I GGWCC 2 cut(s) 85, 198
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 4 cut(s) 85, 198, 257, 258
BmiI GGNNCC 2 cut(s) 200, 259
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 5 cut(s) 178, 289, 484, 493, 611
BmuI ACTGGG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 215, 565
BseAI TCCGGA 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 3 cut(s) 178, 304, 602
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 215, 565
BseSI GKGCMC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 260
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 210, 261
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 2 cut(s) 48, 218
BspANI GGCC 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 200, 259
BspPI GGATC 1 cut(s) 56
BsrI ACTGG 2 cut(s) 215, 565
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 48, 218
BssSI CACGAG 2 cut(s) 52, 389
Bst2BI CACGAG 2 cut(s) 52, 389
Bst4CI ACNGT 2 cut(s) 85, 469
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 3 cut(s) 178, 304, 602
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 2 cut(s) 51, 221
BstMBI GATC 2 cut(s) 48, 218
BstMWI GCNNNNNNNGC 2 cut(s) 214, 223
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 3 cut(s) 178, 304, 602
BtsIMutI CAGTG 2 cut(s) 208, 558
CciI TCATGA 1 cut(s) 90
Cfr13I GGNCC 4 cut(s) 85, 198, 257, 258
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 4, 433
CspCI CAANNNNNGTGG 4 cut(s) 118, 153, 372, 407
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 259, 368, 382, 455, 463
CviKI_1 RGCY 5 cut(s) 259, 368, 382, 455, 463
CviQI GTAC 2 cut(s) 4, 433
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 50, 220
DpnII GATC 2 cut(s) 48, 218
DraIII CACNNNGTG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 85, 198
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 198, 257
EcoRI GAATTC 1 cut(s) 103
EcoT22I ATGCAT 2 cut(s) 520, 604
EcoT38I GRGCYC 1 cut(s) 261
FaeI CATG 1 cut(s) 94
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 90
FokI GGATG 3 cut(s) 185, 311, 589
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 4 cut(s) 38, 203, 369, 488
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 296
HgaI GACGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 94
HinfI GANTC 1 cut(s) 502
HpaII CCGG 1 cut(s) 296
HphI GGTGA 5 cut(s) 89, 152, 179, 197, 463
Hpy166II GTNNAC 1 cut(s) 567
Hpy188III TCNNGA 5 cut(s) 52, 91, 108, 296, 488
Hpy8I GTNNAC 1 cut(s) 567
HpyAV CCTTC 4 cut(s) 14, 17, 248, 548
HpyCH4III ACNGT 2 cut(s) 85, 469
HpyCH4V TGCA 5 cut(s) 302, 360, 484, 518, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 223
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 48, 218
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 5 cut(s) 93, 196, 309, 533, 546
LweI GCATC 5 cut(s) 178, 289, 484, 493, 611
MaeI CTAG 4 cut(s) 38, 203, 369, 488
MaeIII GTNAC 2 cut(s) 121, 469
MalI GATC 2 cut(s) 50, 220
MboI GATC 2 cut(s) 48, 218
MboII GAAGA 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 210, 261
MluCI AATT 4 cut(s) 103, 312, 320, 346
MnlI CCTC 7 cut(s) 98, 104, 136, 163, 256, 398, 441
Mph1103I ATGCAT 2 cut(s) 520, 604
MroI TCCGGA 1 cut(s) 295
MseI TTAA 2 cut(s) 69, 411
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 214, 223
NdeII GATC 2 cut(s) 48, 218
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 200, 259
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 2 cut(s) 520, 604
PagI TCATGA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 200, 259
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 4 cut(s) 85, 198, 257, 258
PspPPI RGGWCCY 1 cut(s) 198
RsaI GTAC 2 cut(s) 5, 434
RsaNI GTAC 2 cut(s) 4, 433
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 2 cut(s) 69, 411
Sau3AI GATC 2 cut(s) 48, 218
Sau96I GGNCC 4 cut(s) 85, 198, 257, 258
SduI GDGCHC 2 cut(s) 210, 261
SetI ASST 8 cut(s) 9, 115, 147, 200, 290, 370, 407, 552
SfaNI GCATC 5 cut(s) 178, 289, 484, 493, 611
SinI GGWCC 2 cut(s) 85, 198
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 4 cut(s) 103, 312, 320, 346
SspMI CTAG 4 cut(s) 38, 203, 369, 488
TaaI ACNGT 2 cut(s) 85, 469
TaqI TCGA 3 cut(s) 231, 505, 541
TaqII GACCGA 1 cut(s) 110
TasI AATT 4 cut(s) 103, 312, 320, 346
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 2 cut(s) 69, 411
Tru9I TTAA 2 cut(s) 69, 411
TscAI CASTG 2 cut(s) 215, 565
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 2 cut(s) 215, 565
VpaK11BI GGWCC 2 cut(s) 85, 198
XapI RAATTY 2 cut(s) 103, 346
XbaI TCTAGA 1 cut(s) 487
XspI CTAG 4 cut(s) 38, 203, 369, 488
Zsp2I ATGCAT 2 cut(s) 520, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.