RchiOBHm_Chr5g0003361

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030219
Physical Location & Seq
Forward (+)
2098633 .. 2099298
666 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGTCCACCCAAATCTACTGCGGGCATCTAGGCAATCTCGAACTCGCTGCCTCTTCTCTTGGCAACACCGGCATCCAAGTTTTTGCCTACGGCCTCATGCTTGGAATGGGAAGTGCGGTGGAAACGCTCTGTGGTCAAGCCTATGGAGCAAAGAAATATGACATGCTAGGCGTATATCTGCAGCGTTCAACGATCCTGCTAATGGCAACTGGGATCCCAGTTATGTTCATCTACATCTTCTCCGAGCCCATCTTGCTTGCCCTAGGCGAATCGGCCACCATTGCCTCTGCAGCCGCAATCTTCGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

103

Amino Acids

10.87

Weight (kDa)

4.96

Isoelectric Point (pI)

26.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 2 - 102 3e-23 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030219)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0003361
rosa_wichuraiana Rw0G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 21, 116, 294
AclWI GGATC 3 cut(s) 187, 208, 221
AcoI YGGCCR 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 189
AlwI GGATC 3 cut(s) 187, 208, 221
AoxI GGCC 2 cut(s) 91, 273
ApeKI GCWGC 3 cut(s) 47, 181, 290
AspA2I CCTAGG 1 cut(s) 262
AvrII CCTAGG 1 cut(s) 262
BamHI GGATCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 34, 193, 302
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BfaI CTAG 3 cut(s) 29, 167, 263
BfmI CTRYAG 2 cut(s) 179, 288
BisI GCNGC 4 cut(s) 48, 182, 291, 294
BlnI CCTAGG 1 cut(s) 262
BlsI GCNGC 4 cut(s) 49, 183, 292, 295
BmiI GGNNCC 1 cut(s) 215
BmrI ACTGGG 2 cut(s) 212, 219
BmsI GCATC 2 cut(s) 34, 81
BmuI ACTGGG 2 cut(s) 212, 219
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 214, 218
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 214, 218
BseXI GCAGC 3 cut(s) 34, 193, 302
BshFI GGCC 2 cut(s) 93, 275
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 202
BsnI GGCC 2 cut(s) 93, 275
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 192, 213
BspACI CCGC 3 cut(s) 21, 116, 294
BspANI GGCC 2 cut(s) 93, 275
BspLI GGNNCC 1 cut(s) 215
BspMAI CTGCAG 2 cut(s) 183, 292
BspPI GGATC 3 cut(s) 187, 208, 221
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 214, 218
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 192, 213
BssT1I CCWWGG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 23, 258
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 195, 216
BstMBI GATC 2 cut(s) 192, 213
BstMWI GCNNNNNNNGC 5 cut(s) 69, 146, 253, 281, 290
BstNSI RCATGY 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 179, 288
BstV1I GCAGC 3 cut(s) 34, 193, 302
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 2 cut(s) 93, 275
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 23, 258
Cfr10I RCCGGY 1 cut(s) 68
CviAII CATG 2 cut(s) 97, 163
CviJI RGCY 5 cut(s) 93, 140, 247, 275, 293
CviKI_1 RGCY 5 cut(s) 93, 140, 247, 275, 293
DpnI GATC 2 cut(s) 194, 215
DpnII GATC 2 cut(s) 192, 213
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 100, 166
FaiI YATR 6 cut(s) 98, 144, 159, 164, 175, 224
FatI CATG 2 cut(s) 96, 162
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 4 cut(s) 48, 182, 291, 294
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 48, 182, 291, 294
FspBI CTAG 3 cut(s) 29, 167, 263
GluI GCNGC 4 cut(s) 48, 182, 291, 294
HaeIII GGCC 2 cut(s) 93, 275
HapII CCGG 1 cut(s) 69
Hin1II CATG 2 cut(s) 100, 166
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 6, 307
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 6, 307
HpyCH4V TGCA 2 cut(s) 181, 290
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 146, 253, 281, 290
Hsp92II CATG 2 cut(s) 100, 166
Kzo9I GATC 2 cut(s) 192, 213
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 82, 195, 209, 231
Lsp1109I GCAGC 3 cut(s) 34, 193, 302
LweI GCATC 2 cut(s) 34, 81
MaeI CTAG 3 cut(s) 29, 167, 263
MalI GATC 2 cut(s) 194, 215
MboI GATC 2 cut(s) 192, 213
MboII GAAGA 3 cut(s) 45, 229, 292
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 3 cut(s) 61, 104, 295
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 5 cut(s) 69, 146, 253, 281, 290
NdeII GATC 2 cut(s) 192, 213
NlaIII CATG 2 cut(s) 100, 166
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 1 cut(s) 166
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 49, 183, 292, 295
PspN4I GGNNCC 1 cut(s) 215
PstI CTGCAG 2 cut(s) 183, 292
PsuI RGATCY 1 cut(s) 213
SatI GCNGC 4 cut(s) 48, 182, 291, 294
Sau3AI GATC 2 cut(s) 192, 213
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 2 cut(s) 34, 81
SfcI CTRYAG 2 cut(s) 179, 288
SsiI CCGC 3 cut(s) 21, 116, 294
SspMI CTAG 3 cut(s) 29, 167, 263
StyI CCWWGG 1 cut(s) 262
TaqI TCGA 1 cut(s) 39
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 269
TseI GCWGC 3 cut(s) 47, 181, 290
TspDTI ATGAA 1 cut(s) 217
XceI RCATGY 1 cut(s) 166
XmaJI CCTAGG 1 cut(s) 262
XspI CTAG 3 cut(s) 29, 167, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.