Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030221

Physical Location & Seq

Genomic Coordinates Forward (+)

2576356 .. 2577076

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTACTTCAAAGCTTATCTTCCTCCTGATCCAAGGGATCGTTCTGCTTTCTGTCCTTGACTTTGCAAATGCACAGGGACTGAAAGTAGGGTTTTATGCAAAGTCATGCCCGAAAGCCGAGGCCATAGTCAAGAAGGTTATCGCTCAAACCATGGCGGTAGCACCTTCACTCGCTGGTCCTTTGCTCAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGCGACGGTTCAGTGCTATTGAATTCTTCAACGAACCAAGCCGAAAAGGATGCAATTCCAAACTTAAGTCTTCGAGGGTTTGAAGTCATTGACAGAGTTAAGTATGCTTTGGAAAAAGCTTGCCCTGGGGTGGTTTCATGCTCTGACATCGTAGCCATTGTAGCTAGGGATGTGGTTGTGGCGGACATGGGACGACATTGGGATGTTGAAACTGGACGAAGAGATGGTAATGTATCAAACATGATAGATGCCTTGCGCAATCTCCCACCACCTACTGCAAACATCACTATGAAAGCTACAGAAGCAAAGCTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

179

Amino Acids

19.22

Weight (kDa)

8.63

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 170	6.7e-43	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030221)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004051
rosa_roxburghii	Rroxscaffold_1G00071940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	479
AciI	CCGC	2 cut(s)	158, 404
AclWI	GGATC	2 cut(s)	25, 47
AcsI	RAATTY	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	12, 244, 252, 305, 431
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AluBI	AGCT	6 cut(s)	16, 341, 386, 518, 532, 537
AluI	AGCT	6 cut(s)	16, 341, 386, 518, 532, 537
AlwI	GGATC	2 cut(s)	25, 47
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	284
BccI	CCATC	1 cut(s)	440
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	348
BfaI	CTAG	2 cut(s)	387, 538
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	286
BlpI	GCTNAGC	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	262, 460
BpiI	GAAGAC	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	533
BsaJI	CCNNGG	5 cut(s)	34, 120, 153, 346, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	34, 120, 153, 346, 347
BseGI	GGATG	3 cut(s)	277, 397, 430
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	93, 426
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	93, 426
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	30, 39
Bsp1720I	GCTNAGC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	158, 404
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	201
BspPI	GGATC	2 cut(s)	25, 47
BspTI	CTTAAG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	5 cut(s)	34, 120, 153, 346, 347
BssMI	GATC	2 cut(s)	30, 39
BssT1I	CCWWGG	2 cut(s)	34, 153
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	436
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	188, 533
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	277, 397, 430
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	2 cut(s)	33, 42
BstMBI	GATC	2 cut(s)	30, 39
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 383, 524
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	277, 397, 430
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	6 cut(s)	108, 154, 203, 360, 409, 463
DdeI	CTNAG	2 cut(s)	188, 533
DpnI	GATC	2 cut(s)	32, 41
DpnII	GATC	2 cut(s)	30, 39
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	34, 153
Eco47I	GGWCC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	34, 153
EcoT22I	ATGCAT	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	34, 153
FaeI	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	93, 426
FatI	CATG	6 cut(s)	107, 153, 202, 359, 408, 462
FokI	GGATG	3 cut(s)	284, 404, 437
FspBI	CTAG	2 cut(s)	387, 538
FspI	TGCGCA	1 cut(s)	479
GlaI	GCGC	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	2 cut(s)	14, 339
Hpy188I	TCNGA	2 cut(s)	191, 367
Hpy188III	TCNNGA	2 cut(s)	28, 133
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	130, 177
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	68, 74, 101, 196, 275, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 383, 524
HpyF3I	CTNAG	2 cut(s)	188, 533
Hsp92II	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	30, 39
LpnPI	CCDG	7 cut(s)	41, 62, 162, 202, 333, 360, 420
LweI	GCATC	2 cut(s)	262, 460
MaeI	CTAG	2 cut(s)	387, 538
MalI	GATC	2 cut(s)	32, 41
MboI	GATC	2 cut(s)	30, 39
MboII	GAAGA	4 cut(s)	13, 240, 284, 453
MluCI	AATT	2 cut(s)	244, 276
MnlI	CCTC	3 cut(s)	35, 115, 290
Mph1103I	ATGCAT	1 cut(s)	198
MseI	TTAA	2 cut(s)	287, 321
MslI	CAYNNNNRTG	3 cut(s)	201, 423, 509
MspCI	CTTAAG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	193, 383, 524
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	30, 39
NlaIII	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
NmeAIII	GCCGAG	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	479
NsiI	ATGCAT	1 cut(s)	198
PasI	CCCWGGG	1 cut(s)	347
PctI	GAATGC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	82
RseI	CAYNNNNRTG	3 cut(s)	201, 423, 509
SaqAI	TTAA	2 cut(s)	287, 321
Sau3AI	GATC	2 cut(s)	30, 39
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	348
SetI	ASST	9 cut(s)	18, 141, 169, 343, 388, 496, 520, 534, 539
SfaNI	GCATC	2 cut(s)	262, 460
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	3 cut(s)	201, 423, 509
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	2 cut(s)	244, 276
SsiI	CCGC	2 cut(s)	158, 404
SspMI	CTAG	2 cut(s)	387, 538
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	34, 153
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	244, 276
Tru1I	TTAA	2 cut(s)	287, 321
Tru9I	TTAA	2 cut(s)	287, 321
TscAI	CASTG	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	348, 527
TspRI	CASTG	1 cut(s)	240
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	2 cut(s)	387, 538
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.