Rroxscaffold_1G00071940

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0030221
Physical Location & Seq
Reverse (-)
93082661 .. 93083431
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071940.1

Sequence Viewer

Length: 585 bp
ATGGCTACTTCAAAGCTTATCTTCATCGTGATCCAAGGGATCGTTCTGCTTTCTTTCCTTGACTTTGCAAATGCACAAGGACTGAAAGTAGGGTTTTATGCAAAGTCATGCCCGAAAGCCGAGGCCATAGTCAAGAAGGTTATCGCTCAAACCATGGCGGTAGCACCTTCACTCGCTGGTCCTTTGCTGAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGCGACGGTTCAGTGCTATTGAATTCTTCAACAAACCAAGCCGAAAAGGACGCACCTCCAAACCTAAGTCTTCGAGGGTATGGAGTCATTGACAGAGTTAAGTCTGCTTTGGAAAAAGCATGTCCTGGAGTGGTTTCATGCTCTGACATCATAGCCATTGTAGCTAGGGATGTGGTTGTCGCGGACATGGGAGGACATTGGGATGTTGAAACTGGACGAAGAGATGGTAAGGTATCAAGCATGACAGATGCCTTGCTCAATCTCCCATCACCTCGTTCAAACATCACTATACTAAAATCAAGCTTTGCACAGAAGGGTCTAAGCGCTAAAGATCTTGTAGTACTATCAGGTATACCTAATTAA

Protein Analysis

194

Amino Acids

20.53

Weight (kDa)

9.02

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 191 7.2e-52 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030221)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0004051
rosa_roxburghii Rroxscaffold_1G00071940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 574
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 158, 404
AclWI GGATC 2 cut(s) 25, 47
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 564
AfeI AGCGCT 1 cut(s) 547
AgsI TTSAA 5 cut(s) 12, 244, 252, 431, 501
AjnI CCWGG 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 16, 386, 525
AluI AGCT 3 cut(s) 16, 386, 525
AlwI GGATC 2 cut(s) 25, 47
Aor51HI AGCGCT 1 cut(s) 547
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 483
AvaII GGWCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 284
BccI CCATC 2 cut(s) 440, 496
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 549
BglII AGATCT 1 cut(s) 553
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 34, 120, 153
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 34, 120, 153
BseGI GGATG 2 cut(s) 397, 430
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 30, 39, 553
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 2 cut(s) 158, 404
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 404
BspPI GGATC 2 cut(s) 25, 47
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 34, 120, 153
BssMI GATC 3 cut(s) 30, 39, 553
BssNAI GTATAC 1 cut(s) 575
BssT1I CCWWGG 2 cut(s) 34, 153
Bst1107I GTATAC 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 436
BstDEI CTNAG 3 cut(s) 188, 287, 542
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 397, 430
BstFNI CGCG 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 3 cut(s) 33, 42, 556
BstMBI GATC 3 cut(s) 30, 39, 553
BstMWI GCNNNNNNNGC 2 cut(s) 193, 383
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 575
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 397, 430
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 563
CviAII CATG 7 cut(s) 108, 154, 203, 342, 360, 409, 463
CviJI RGCY 8 cut(s) 5, 16, 119, 125, 263, 377, 386, 525
CviKI_1 RGCY 8 cut(s) 5, 16, 119, 125, 263, 377, 386, 525
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 3 cut(s) 188, 287, 542
DpnI GATC 3 cut(s) 32, 41, 555
DpnII GATC 3 cut(s) 30, 39, 553
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 34, 153
Eco47I GGWCC 1 cut(s) 179
Eco47III AGCGCT 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 34, 153
EcoT22I ATGCAT 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 34, 153
FaeI CATG 7 cut(s) 111, 157, 206, 345, 363, 412, 466
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 7 cut(s) 107, 153, 202, 341, 359, 408, 462
FblI GTMKAC 1 cut(s) 574
FokI GGATG 2 cut(s) 404, 437
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 547
GsuI CTGGAG 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 548
Hin1II CATG 7 cut(s) 111, 157, 206, 345, 363, 412, 466
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HindIII AAGCTT 2 cut(s) 14, 523
HinfI GANTC 1 cut(s) 306
HphI GGTGA 1 cut(s) 483
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 28, 133
Hpy8I GTNNAC 1 cut(s) 575
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 130, 177, 529
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 68, 74, 101, 196, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 383
HpyF3I CTNAG 3 cut(s) 188, 287, 542
Hsp92II CATG 7 cut(s) 111, 157, 206, 345, 363, 412, 466
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 3 cut(s) 30, 39, 553
LpnPI CCDG 6 cut(s) 162, 202, 333, 360, 420, 555
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 387
MalI GATC 3 cut(s) 32, 41, 555
MboI GATC 3 cut(s) 30, 39, 553
MboII GAAGA 4 cut(s) 13, 240, 284, 453
MflI RGATCY 1 cut(s) 553
MluCI AATT 2 cut(s) 244, 580
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 5 cut(s) 115, 288, 290, 407, 504
Mph1103I ATGCAT 1 cut(s) 198
MseI TTAA 2 cut(s) 321, 583
MslI CAYNNNNRTG 2 cut(s) 201, 423
MspR9I CCNGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 193, 383
NcoI CCATGG 1 cut(s) 153
NdeII GATC 3 cut(s) 30, 39, 553
NlaIII CATG 7 cut(s) 111, 157, 206, 345, 363, 412, 466
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 1 cut(s) 345
PctI GAATGC 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 346
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 2 cut(s) 201, 423
SaqAI TTAA 2 cut(s) 321, 583
Sau3AI GATC 3 cut(s) 30, 39, 553
Sau96I GGNCC 1 cut(s) 179
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 348
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 201, 423
Sse9I AATT 2 cut(s) 244, 580
SsiI CCGC 2 cut(s) 158, 404
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 34, 153
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 244, 580
TatI WGTACW 1 cut(s) 562
Tru1I TTAA 2 cut(s) 321, 583
Tru9I TTAA 2 cut(s) 321, 583
TscAI CASTG 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 13, 348
TspRI CASTG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 244
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 564
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.