RchiOBHm_Chr5g0012461

1,4-alpha-glucan-branching enzyme 3, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
8389590 .. 8390493
904 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGACAATTGGTGGCCGTGCTTATCTCAACTTCATGGGCAACGAATTTGGGCATCCAGAGAGGGTTGAGTTCCCAATGCCAAGCAACAATTTCTCATTTTCACTTGCCAACCGAAGGTGGATCTTCTTGCCAACGAGAGATTGCATCGCAACTTGTTTACCTTCGATAAGGTATCAACTGCCAACAATTTGTTTCCATCTTATTACCCTTACATGCTACATCGTGTGGTTCTGGCTCTCTTTCTGTCGCAAATGGCTCTGTAATTGTTCTAGCTGTTGTTGA

Protein Analysis

93

Amino Acids

10.96

Weight (kDa)

8.66

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0030259)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0012461
rosa_samantha Rh2AG412700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 44
BccI CCATC 1 cut(s) 204
BfaI CTAG 1 cut(s) 270
BmsI GCATC 2 cut(s) 61, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 114
BshFI GGCC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 120
BspANI GGCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 128
BssMI GATC 1 cut(s) 120
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 52
CviAII CATG 2 cut(s) 34, 213
CviJI RGCY 4 cut(s) 15, 235, 256, 273
CviKI_1 RGCY 4 cut(s) 15, 235, 256, 273
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 13
FaeI CATG 2 cut(s) 37, 216
FaiI YATR 2 cut(s) 35, 214
FatI CATG 2 cut(s) 33, 212
FokI GGATG 1 cut(s) 39
FspBI CTAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 15
Hin1II CATG 2 cut(s) 37, 216
Hpy166II GTNNAC 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 108, 171
HpyCH4V TGCA 1 cut(s) 144
Hsp92II CATG 2 cut(s) 37, 216
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 2 cut(s) 69, 217
LweI GCATC 2 cut(s) 61, 153
MaeI CTAG 1 cut(s) 270
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 120
MluCI AATT 5 cut(s) 6, 44, 88, 186, 262
MnlI CCTC 1 cut(s) 54
MunI CAATTG 1 cut(s) 6
NdeII GATC 1 cut(s) 120
NlaIII CATG 2 cut(s) 37, 216
NspI RCATGY 1 cut(s) 216
PsuI RGATCY 1 cut(s) 120
Sau3AI GATC 1 cut(s) 120
SetI ASST 4 cut(s) 119, 163, 173, 275
SfaNI GCATC 2 cut(s) 61, 153
Sse9I AATT 5 cut(s) 6, 44, 88, 186, 262
SspMI CTAG 1 cut(s) 270
TaqI TCGA 1 cut(s) 164
TasI AATT 5 cut(s) 6, 44, 88, 186, 262
TspDTI ATGAA 1 cut(s) 22
XapI RAATTY 1 cut(s) 44
XceI RCATGY 1 cut(s) 216
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.