Rh2AG412700

1,4-alpha-glucan-branching enzyme 3, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
61238183 .. 61257557
19375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG412700.1

Sequence Viewer

Length: 180 bp
ATGCCGAGAACCCAACCTTGGAATTTAAGGGTTGAGTTCCCAATGCCAAGCAACAATTTCTCATTTTCACTTGCCAACCGAAGGTGGATCTTCTTGCCAACGAGAGATTGCATCGCAACTTGTTTACCTTCGATAAGATGGGTGAGGGTAACCTTTGGGAAGGTCCTTAATGAACACTGA

Protein Analysis

59

Amino Acids

7.05

Weight (kDa)

11.25

Isoelectric Point (pI)

70.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0030259)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0012461
rosa_samantha Rh2AG412700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 18, 81
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AlwI GGATC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 163
BccI CCATC 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 81
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 18, 81
BslI CCNNNNNNNGG 2 cut(s) 18, 81
Bsp143I GATC 1 cut(s) 87
BspPI GGATC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 17
BstEII GGTNACC 1 cut(s) 148
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 163
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 75, 138, 154
HpyCH4V TGCA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 87
LweI GCATC 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 82
MflI RGATCY 1 cut(s) 87
MluCI AATT 2 cut(s) 22, 55
MnlI CCTC 1 cut(s) 138
MseI TTAA 2 cut(s) 26, 168
NdeII GATC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PsuI RGATCY 1 cut(s) 87
SaqAI TTAA 2 cut(s) 26, 168
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 163
SetI ASST 5 cut(s) 19, 86, 130, 155, 165
SfaNI GCATC 1 cut(s) 120
SgeI CNNG 7 cut(s) 18, 30, 60, 83, 106, 114, 132
SinI GGWCC 1 cut(s) 163
Sse9I AATT 2 cut(s) 22, 55
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 22, 55
Tru1I TTAA 2 cut(s) 26, 168
Tru9I TTAA 2 cut(s) 26, 168
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.