RchiOBHm_Chr5g0014131

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022750
Physical Location & Seq
Reverse (-)
9624892 .. 9625597
706 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
ATGCAGGGAAAGTCTGAGACTGTTGGAGGGAATTTCAGTACCCAAAATAGGATTTCCTATTTTGTTCATTACAATGAGAGCACTGAAATGCTTTGTGGGTTCCTGAAGAAATTTCCAGTTAGTGATTCTGATAGAACTGTCATGGAAGTGTGTAGAGGACTTGTAGTAGTCTCGGCTATCTTCAATGATCATGATAAAATTCGACAACCCAAGGGGATTGGATCGAAAACCCTTGAGAATGTATGTTTGTTTATGTTTATAGATGAGATAACCCTCAAAAGATTTTACCAGCAACATTTGATTCCAGAAAAATCTGAAAACTACAAGATTGGTGCATGGAGGGTTGTCAAGGGTTTGAGCAAGGGATTGTATGAGAATCCGGCAATGAATGGTGTGATACCAAAGTATTTAGTTCATAGACTTTTCCCAAACGCCAAATTCATCATTTGGGTGGATGCGAAAATGCAGCTGATGGTTGATCCATTACTTTTGATTCATACACTTGCTGTGAATGAGAACCCCGATATGGCGATTTCAAAGCATCCTTACTATGTTCATAGTTTCATACTATGGAAGAAGCAATGGCGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616

Protein Analysis

197

Amino Acids

22.9

Weight (kDa)

9.38

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 4 - 186 2.6e-58 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022750)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0014131
rosa_laevigata RLG00000032084
rosa_rugosa Rorug05G0015900
rosa_samantha Rh5CG118800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 229, 473
AcsI RAATTY 4 cut(s) 31, 110, 198, 437
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 48, 526
AgsI TTSAA 2 cut(s) 184, 537
AluBI AGCT 1 cut(s) 469
AluI AGCT 1 cut(s) 469
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 11, 175
AlwI GGATC 2 cut(s) 229, 473
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 4 cut(s) 31, 110, 198, 437
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 466
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 11, 175
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 2 cut(s) 445, 550
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 526
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 390, 587
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 460, 541
BseLI CCNNNNNNNGG 2 cut(s) 48, 526
BseMI GCAATG 2 cut(s) 390, 587
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 48, 526
BsmAI GTCTC 2 cut(s) 11, 175
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 3 cut(s) 187, 221, 478
BspCNI CTCAG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 2 cut(s) 229, 473
BsrDI GCAATG 2 cut(s) 390, 587
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 187, 221, 478
BssT1I CCWWGG 1 cut(s) 210
Bst4CI ACNGT 3 cut(s) 22, 139, 591
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 460, 541
BstKTI GATC 3 cut(s) 190, 224, 481
BstMAI GTCTC 2 cut(s) 11, 175
BstMBI GATC 3 cut(s) 187, 221, 478
BstV1I GCAGC 1 cut(s) 478
BtsCI GGATG 2 cut(s) 460, 541
BtsIMutI CAGTG 1 cut(s) 81
CciI TCATGA 1 cut(s) 190
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 142, 191, 336
CviJI RGCY 2 cut(s) 176, 469
CviKI_1 RGCY 2 cut(s) 176, 469
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 15
DpnI GATC 3 cut(s) 189, 223, 480
DpnII GATC 3 cut(s) 187, 221, 478
Eco130I CCWWGG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 3 cut(s) 145, 194, 339
FatI CATG 3 cut(s) 141, 190, 335
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 2 cut(s) 467, 528
Fsp4HI GCNGC 1 cut(s) 467
GluI GCNGC 1 cut(s) 467
HapII CCGG 1 cut(s) 380
Hin1II CATG 3 cut(s) 145, 194, 339
HinfI GANTC 4 cut(s) 125, 301, 376, 493
HpaII CCGG 1 cut(s) 380
Hpy188I TCNGA 3 cut(s) 16, 130, 316
Hpy188III TCNNGA 3 cut(s) 103, 191, 305
Hpy99I CGWCG 1 cut(s) 591
HpyCH4III ACNGT 3 cut(s) 22, 139, 591
HpyCH4V TGCA 3 cut(s) 4, 335, 466
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 3 cut(s) 145, 194, 339
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 187, 221, 478
LpnPI CCDG 5 cut(s) 116, 129, 302, 318, 393
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 445, 550
MalI GATC 3 cut(s) 189, 223, 480
MboI GATC 3 cut(s) 187, 221, 478
MboII GAAGA 3 cut(s) 118, 172, 586
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 4 cut(s) 31, 110, 198, 437
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 4 cut(s) 20, 149, 284, 333
MslI CAYNNNNRTG 4 cut(s) 72, 86, 146, 449
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 1 cut(s) 380
NdeII GATC 3 cut(s) 187, 221, 478
NlaIII CATG 3 cut(s) 145, 194, 339
NlaIV GGNNCC 1 cut(s) 101
NmeAIII GCCGAG 1 cut(s) 152
PagI TCATGA 1 cut(s) 190
PfeI GAWTC 4 cut(s) 125, 301, 376, 493
PkrI GCNGC 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 4 cut(s) 72, 86, 146, 449
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 3 cut(s) 187, 221, 478
SduI GDGCHC 1 cut(s) 83
SetI ASST 1 cut(s) 471
SfaNI GCATC 2 cut(s) 445, 550
SmiMI CAYNNNNRTG 4 cut(s) 72, 86, 146, 449
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 31, 110, 198, 437
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 22, 139, 591
TaqI TCGA 2 cut(s) 202, 224
TasI AATT 4 cut(s) 31, 110, 198, 437
TfiI GAWTC 4 cut(s) 125, 301, 376, 493
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 466
TspDTI ATGAA 7 cut(s) 56, 401, 404, 430, 485, 545, 553
TspRI CASTG 1 cut(s) 88
XapI RAATTY 4 cut(s) 31, 110, 198, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.