Rh5CG118800

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022750
Physical Location & Seq
Reverse (-)
9795161 .. 9796092
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG118800.1

Sequence Viewer

Length: 654 bp
ATGGAGAACACAAGTATGCAATCCCAACCCAACGTAGATCTAGCTCTTCCCCTGTCCATTTCTCAGGGAAAGTCTGAGACTGTTGGAGGGAATTTCAGTACCCAAAATAGGATTTCCTATTTTGTTCATTACAATGAGAGCACTGAAATGCTTTGTGGGTTCCTGAAGAAATTTCCAGTTAGTGATTCTGATAGAACTGTCATGGAAGTGTGTAGAGGACTTGTAGTAGTCTCGGCTATCTTCAATGATCATGATAAAATTCGACAACCCAAGGGGATTGGATCGAAAACCCTTGAGAATGTATGTTTGTTTATGTTTATAGATGAGATAACCCTCAAAAGATTTTACCAGCAACATTTGATTCCAGAAAAATCTGAAAACTACAAGATTGGTGCATGGAGGGTTGTCAAGGGTTTGAGCAAGGGATTGTATGAGAATCCGGCAATGAATGGTGTGATACCAAAGTATTTAGTTCATAGACTTTTCCCAAACGCCAAATTCATCATTTGGGTGGATGCGAAAATGCAGCTGATGGTTGATCCATTACTTTTGATTCATACACTTGCTGTGAATGAGAACCCCGATATGGCGATTTCAAAGCATCCTTACTATGTTCATAGTTTCATACTATGGAAGAAGCAATGGCGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616

Protein Analysis

217

Amino Acids

25.03

Weight (kDa)

9.17

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 24 - 206 2.5e-58 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022750)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0014131
rosa_laevigata RLG00000032084
rosa_rugosa Rorug05G0015900
rosa_samantha Rh5CG118800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 289, 533
AcsI RAATTY 4 cut(s) 91, 170, 258, 497
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 108, 586
AgsI TTSAA 2 cut(s) 244, 597
AluBI AGCT 2 cut(s) 44, 529
AluI AGCT 2 cut(s) 44, 529
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 71, 235
AlwI GGATC 2 cut(s) 289, 533
ApeKI GCWGC 1 cut(s) 526
ApoI RAATTY 4 cut(s) 91, 170, 258, 497
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 538
BccI CCATC 1 cut(s) 526
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 71, 235
BfaI CTAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
BmiI GGNNCC 1 cut(s) 161
BmsI GCATC 2 cut(s) 505, 610
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 586
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 2 cut(s) 450, 647
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 520, 601
BseLI CCNNNNNNNGG 2 cut(s) 108, 586
BseMI GCAATG 2 cut(s) 450, 647
BseMII CTCAG 2 cut(s) 66, 77
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 108, 586
BsmAI GTCTC 2 cut(s) 71, 235
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 4 cut(s) 37, 247, 281, 538
BspCNI CTCAG 2 cut(s) 67, 76
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 2 cut(s) 289, 533
BspQI GCTCTTC 1 cut(s) 51
BsrDI GCAATG 2 cut(s) 450, 647
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 4 cut(s) 37, 247, 281, 538
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 82, 199, 651
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 63, 75
BstF5I GGATG 2 cut(s) 520, 601
BstKTI GATC 4 cut(s) 40, 250, 284, 541
BstMAI GTCTC 2 cut(s) 71, 235
BstMBI GATC 4 cut(s) 37, 247, 281, 538
BstV1I GCAGC 1 cut(s) 538
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 2 cut(s) 520, 601
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 250
Csp6I GTAC 1 cut(s) 99
CviAII CATG 3 cut(s) 202, 251, 396
CviJI RGCY 3 cut(s) 44, 236, 529
CviKI_1 RGCY 3 cut(s) 44, 236, 529
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 63, 75
DpnI GATC 4 cut(s) 39, 249, 283, 540
DpnII GATC 4 cut(s) 37, 247, 281, 538
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 205, 254, 399
FatI CATG 3 cut(s) 201, 250, 395
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 527
FokI GGATG 2 cut(s) 527, 588
Fsp4HI GCNGC 1 cut(s) 527
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 527
HapII CCGG 1 cut(s) 440
Hin1II CATG 3 cut(s) 205, 254, 399
HinfI GANTC 4 cut(s) 185, 361, 436, 553
HpaII CCGG 1 cut(s) 440
Hpy188I TCNGA 3 cut(s) 76, 190, 376
Hpy188III TCNNGA 3 cut(s) 163, 251, 365
Hpy99I CGWCG 1 cut(s) 651
HpyCH4III ACNGT 3 cut(s) 82, 199, 651
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 19, 395, 526
HpyF3I CTNAG 2 cut(s) 63, 75
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 3 cut(s) 205, 254, 399
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 37, 247, 281, 538
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 7 cut(s) 50, 65, 176, 189, 362, 378, 453
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 2 cut(s) 505, 610
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 33
MalI GATC 4 cut(s) 39, 249, 283, 540
MboI GATC 4 cut(s) 37, 247, 281, 538
MboII GAAGA 4 cut(s) 38, 178, 232, 646
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 4 cut(s) 91, 170, 258, 497
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 80, 209, 344, 393
MslI CAYNNNNRTG 5 cut(s) 14, 132, 146, 206, 509
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 1 cut(s) 440
NdeII GATC 4 cut(s) 37, 247, 281, 538
NlaIII CATG 3 cut(s) 205, 254, 399
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 212
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 51
PfeI GAWTC 4 cut(s) 185, 361, 436, 553
PkrI GCNGC 1 cut(s) 528
PspN4I GGNNCC 1 cut(s) 161
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 5 cut(s) 14, 132, 146, 206, 509
SapI GCTCTTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 4 cut(s) 37, 247, 281, 538
SduI GDGCHC 1 cut(s) 143
SetI ASST 3 cut(s) 36, 46, 531
SfaNI GCATC 2 cut(s) 505, 610
SmiMI CAYNNNNRTG 5 cut(s) 14, 132, 146, 206, 509
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 4 cut(s) 91, 170, 258, 497
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 3 cut(s) 82, 199, 651
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 262, 284
TasI AATT 4 cut(s) 91, 170, 258, 497
TfiI GAWTC 4 cut(s) 185, 361, 436, 553
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 526
TspDTI ATGAA 7 cut(s) 116, 461, 464, 490, 545, 605, 613
TspRI CASTG 1 cut(s) 148
XapI RAATTY 4 cut(s) 91, 170, 258, 497
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.