Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020888

Physical Location & Seq

Genomic Coordinates Forward (+)

11958529 .. 11958774

Gene Structure 246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTCACACTCAGTAAAGATTTATGATACGTGTATAGGGTGTACTCAATGTGTGCGAGCCTGCCCAACCGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCTAAGCAAATCGCTTCTGCTCCAAGAACAGAGGACTGTGTCGGTTGTAAGAGATGTGAATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGTATGGGTCTAGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009522 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Fer4 Fer4_4

Protein Analysis

81

Amino Acids

9.04

Weight (kDa)

6.68

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4	PF00037	6 - 26	3.3e-07	4Fe-4S binding domain
Fer4_21	PF14697	9 - 62	7.1e-11	4Fe-4S dicluster domain
Fer4_7	PF12838	10 - 61	1.6e-10	4Fe-4S dicluster domain
Fer4_9	PF13187	11 - 61	3.9e-07	4Fe-4S dicluster domain
Fer4	PF00037	45 - 63	1.1e-06	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01060
rosa_chinensis	RchiOBHm_Chr5g0017221 RchiOBHm_Chr5g0043041 RchiOBHm_CPg0502781
rosa_wichuraiana	Rw7G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	29
AluBI	AGCT	2 cut(s)	107, 239
AluI	AGCT	2 cut(s)	107, 239
ArsI	GACNNNNNNTTYG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	107
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	57, 61
BstDEI	CTNAG	2 cut(s)	10, 108
BstF5I	GGATG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	57, 61
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	59, 107, 239
CviKI_1	RGCY	3 cut(s)	59, 107, 239
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	2 cut(s)	10, 108
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	24, 35, 208, 213, 230
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	211
FokI	GGATG	1 cut(s)	111
FspBI	CTAG	1 cut(s)	236
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	10, 108
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	73, 184
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	244
MvnI	CGCG	1 cut(s)	198
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	244
SetI	ASST	4 cut(s)	32, 91, 109, 241
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	223
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	2 cut(s)	111, 194
Tth111I	GACNNNGTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.