RchiOBHm_Chr5g0029341

phenolic glucoside malonyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
22987851 .. 22988159
309 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGGCAAATCCAAATCCAAATCCAGTGAAAGTAGTTGAGGTTTGCAGAGTAGCTCCACAACCGGCCTCAGCCTCGATGTCACTTCCTCTAACCTTCTTTGATCTACTTTGGCTGAGGTTTGAACCCTTCCAACGCCTTTTCTTTTATGAAGCCTCTAACACAACACTCTTCTTCAAATCCATACTTCCAAGGCTCAAAACCTCCCTATCACTCACTCTTCACCACTTGTTGGAAACCTCACCTAGCCTGAAGACTCCCCTAAGCCGATTCTCAGCTATGTCAAAGGCAACACCGTTTCGCTCACAATAG

Protein Analysis

102

Amino Acids

11.59

Weight (kDa)

10.28

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025025)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0029341
rosa_multiflora Rmu_sc0004205.1_g000005
rosa_samantha Rh5CG225700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 122, 175
AluBI AGCT 2 cut(s) 53, 275
AluI AGCT 2 cut(s) 53, 275
AoxI GGCC 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 212, 231
BbsI GAAGAC 1 cut(s) 257
BbvCI CCTCAGC 2 cut(s) 67, 113
BfaI CTAG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 257
Bpu10I CCTNAGC 3 cut(s) 67, 113, 260
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 81, 104, 285
BseNI ACTGG 1 cut(s) 23
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 229
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 100
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 80, 105, 284
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 173, 222
BstDEI CTNAG 4 cut(s) 67, 113, 260, 271
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 61
CviJI RGCY 9 cut(s) 53, 65, 71, 112, 152, 193, 246, 264, 275
CviKI_1 RGCY 9 cut(s) 53, 65, 71, 112, 152, 193, 246, 264, 275
DdeI CTNAG 4 cut(s) 67, 113, 260, 271
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 173, 222
EarI CTCTTC 2 cut(s) 173, 222
Eco130I CCWWGG 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaiI YATR 3 cut(s) 147, 182, 278
FspBI CTAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 62
HinfI GANTC 2 cut(s) 253, 267
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 212, 231
HpyAV CCTTC 2 cut(s) 103, 136
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 45
HpyF3I CTNAG 4 cut(s) 67, 113, 260, 271
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 36, 75, 260
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 160, 163, 209, 262
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 154, 210
MnlI CCTC 8 cut(s) 31, 76, 82, 96, 108, 163, 211, 247
MspI CCGG 1 cut(s) 62
NdeII GATC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 229
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 247
SetI ASST 8 cut(s) 42, 55, 95, 119, 203, 239, 244, 277
SgeI CNNG 7 cut(s) 35, 74, 85, 201, 238, 255, 259
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 74
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 229
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.