Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025025

Physical Location & Seq

Genomic Coordinates Reverse (-)

23019806 .. 23020711

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG225700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGAGGCATGAAGTTCACCGATCCCCTGGCTAGCTTGATCACTTGGGCTTTTTCATCTCCAATGGCAAATCCAAATCCAAATCCAGTGAAAGTAGTTGAGGTTTGCAGAGTAGCTCCACAACCGGCCTCAGCCTCTATGTCACTTCCTCTAACCTTCTGTGATCTACTTTGGCTGAGGTTTGAACCCTTCCAACGCCTTTTCTTTTATGAAGCCTCTAACACAACACTCTTCTTCAAATCCATACTTCCAAGGCTCAAAACCTCCCTATCACTCACTCTTCACCACTTTTCACCTCTTGTTGGAAACCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

105

Amino Acids

11.75

Weight (kDa)

9.24

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	30 - 104	3.4e-06	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025025)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0029341
rosa_multiflora	Rmu_sc0004205.1_g000005
rosa_samantha	Rh5CG225700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	185, 238
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	36, 116
AluI	AGCT	2 cut(s)	36, 116
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	126
AsuHPI	GGTGA	4 cut(s)	10, 275, 285, 304
AsuNHI	GCTAGC	1 cut(s)	32
BbvCI	CCTCAGC	2 cut(s)	130, 176
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	39
BfaI	CTAG	2 cut(s)	33, 316
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmtI	GCTAGC	1 cut(s)	36
Bpu10I	CCTNAGC	2 cut(s)	130, 176
BsaJI	CCNNGG	2 cut(s)	27, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	27, 251
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	144, 167
BseNI	ACTGG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	302
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	22, 39, 163
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	143, 168
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	27, 251
BssMI	GATC	3 cut(s)	22, 39, 163
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	236, 285
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	130, 176
BstKTI	GATC	3 cut(s)	25, 42, 166
BstMBI	GATC	3 cut(s)	22, 39, 163
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	124
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	9 cut(s)	32, 36, 50, 116, 128, 134, 175, 215, 256
CviKI_1	RGCY	9 cut(s)	32, 36, 50, 116, 128, 134, 175, 215, 256
DdeI	CTNAG	2 cut(s)	130, 176
DpnI	GATC	3 cut(s)	24, 41, 165
DpnII	GATC	3 cut(s)	22, 39, 163
Eam1104I	CTCTTC	2 cut(s)	236, 285
EarI	CTCTTC	2 cut(s)	236, 285
Eco130I	CCWWGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	1 cut(s)	13
FaiI	YATR	4 cut(s)	11, 140, 210, 245
FatI	CATG	1 cut(s)	9
FbaI	TGATCA	1 cut(s)	39
FspBI	CTAG	2 cut(s)	33, 316
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	13
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	4 cut(s)	10, 275, 285, 304
Hpy166II	GTNNAC	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	166, 199
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	130, 176
Hsp92II	CATG	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	22, 39, 163
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	14, 41, 99, 138
MaeI	CTAG	2 cut(s)	33, 316
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	3 cut(s)	24, 41, 165
MboI	GATC	3 cut(s)	22, 39, 163
MboII	GAAGA	3 cut(s)	223, 226, 272
MmeI	TCCRAC	2 cut(s)	217, 283
MnlI	CCTC	8 cut(s)	94, 139, 145, 159, 171, 226, 274, 306
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
NdeII	GATC	3 cut(s)	22, 39, 163
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	22, 39, 163
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	9 cut(s)	38, 105, 118, 158, 182, 266, 298, 312, 317
SspMI	CTAG	2 cut(s)	33, 316
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	251
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	3 cut(s)	26, 45, 225
TspRI	CASTG	1 cut(s)	93
XspI	CTAG	2 cut(s)	33, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.