RchiOBHm_Chr5g0042941

Profilin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030208
Physical Location & Seq
Forward (+)
37809931 .. 37810778
848 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGTTCTCCCTCACCATCTCCGTCACCAGCCCCTCAAGACCATCACCGACCTCAATCCACCTGACTGCCGTGGCCATCGTCGGTCACGATGGCAGTGTGTGGGCTCAGAGCTCCAGCTTCCCTCAGTTCAGGCCGGAAGAAGTTGCAGCGATAATGAAGGATTTCAATGAGCCAGGGTCTCTTGCCCAACTGGATTGTACCTTGGTGGCACAAAGTACTGGTGGCATTACTGTGAAGAAAACCAGCCAGGCTTGGTGGTATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

88

Amino Acids

9.48

Weight (kDa)

6.7

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 19 - 64 1.3e-08 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030208)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0042941
rosa_multiflora Rmu_sc0001400.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 2 cut(s) 199, 217
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 2 cut(s) 172, 246
AluBI AGCT 2 cut(s) 111, 117
AluI AGCT 2 cut(s) 111, 117
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 183
AoxI GGCC 2 cut(s) 72, 131
ApeKI GCWGC 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 4, 16, 36
BalI TGGCCA 1 cut(s) 74
BanII GRGCYC 2 cut(s) 106, 113
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 158
BccI CCATC 4 cut(s) 23, 49, 83, 83
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 174, 248
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmcAI AGTACT 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 174, 248
BmrFI CCNGG 2 cut(s) 174, 248
BpmI CTGGAG 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 69, 173, 201
Bse1I ACTGG 2 cut(s) 195, 223
BseBI CCWGG 2 cut(s) 174, 248
BseDI CCNNGG 3 cut(s) 69, 173, 201
BseMII CTCAG 2 cut(s) 119, 137
BseNI ACTGG 2 cut(s) 195, 223
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 74, 133
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 2 cut(s) 74, 133
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 106, 113
BspANI GGCC 2 cut(s) 74, 133
BspCNI CTCAG 2 cut(s) 118, 136
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 2 cut(s) 195, 223
BssECI CCNNGG 3 cut(s) 69, 173, 201
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 174, 248
Bst4CI ACNGT 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 105, 123
BstDSI CCRYGG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 183
BstNI CCWGG 2 cut(s) 174, 248
BstSCI CCNGG 2 cut(s) 172, 246
BstV1I GCAGC 1 cut(s) 158
BsuRI GGCC 2 cut(s) 74, 133
BtgI CCRYGG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
Csp6I GTAC 2 cut(s) 198, 216
CviJI RGCY 9 cut(s) 30, 74, 104, 111, 117, 133, 172, 246, 251
CviKI_1 RGCY 9 cut(s) 30, 74, 104, 111, 117, 133, 172, 246, 251
CviQI GTAC 2 cut(s) 198, 216
DdeI CTNAG 2 cut(s) 105, 123
EaeI YGGCCR 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 106, 113
Eco31I GGTCTC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 172, 246
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 106, 113
ErhI CCWWGG 1 cut(s) 201
FaiI YATR 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 2 cut(s) 106, 113
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 2 cut(s) 74, 133
HapII CCGG 1 cut(s) 134
HpaII CCGG 1 cut(s) 134
HphI GGTGA 3 cut(s) 4, 16, 36
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 36, 86
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 105, 123
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 22, 83
MboII GAAGA 2 cut(s) 149, 247
MhlI GDGCHC 2 cut(s) 106, 113
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 4 cut(s) 20, 43, 61, 132
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 174, 248
MvaI CCWGG 2 cut(s) 174, 248
NmuCI GTSAC 2 cut(s) 22, 83
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 172, 246
PspGI CCWGG 2 cut(s) 172, 246
RsaI GTAC 2 cut(s) 199, 217
RsaNI GTAC 2 cut(s) 198, 216
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 113
SatI GCNGC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 174, 248
SduI GDGCHC 2 cut(s) 106, 113
SetI ASST 5 cut(s) 53, 63, 113, 119, 203
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SstI GAGCTC 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 172, 246
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 232
TaqII GACCGA 1 cut(s) 71
TatI WGTACW 1 cut(s) 215
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 22, 83
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 2 cut(s) 22, 83
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.