Rmu_sc0001400.1_g000005

Profilin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001400.1
OG0030208
Physical Location & Seq
Reverse (-)
18426 .. 18963
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001400.1_g000005.1.cds

Sequence Viewer

Length: 249 bp
atgttctccctcaccatctccgtcgccagcccctcaagaccatcaccgacctcaatccacctgactgccgtggccatcgtcggtcacgatggcagtgtgtgggctcagagctccagcttccctcagttcaggccggaagaagttgcagcgataatgaaggatttcaatgagccagggtctcttgcccaactggattgtaccttggtggcacagagtacatggttaatcaggggaagagtggagccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

82

Amino Acids

8.83

Weight (kDa)

5.45

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030208)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0042941
rosa_multiflora Rmu_sc0001400.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 2 cut(s) 199, 217
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 111, 117
AluI AGCT 2 cut(s) 111, 117
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 183
AoxI GGCC 2 cut(s) 72, 131
ApeKI GCWGC 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 4, 36
BalI TGGCCA 1 cut(s) 74
BanII GRGCYC 2 cut(s) 106, 113
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 158
BccI CCATC 4 cut(s) 23, 49, 83, 83
BceAI ACGGC 2 cut(s) 53, 229
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 69, 173, 201
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 69, 173, 201
BseMII CTCAG 2 cut(s) 119, 137
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 74, 133
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 183
BsnI GGCC 2 cut(s) 74, 133
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 106, 113
BspANI GGCC 2 cut(s) 74, 133
BspCNI CTCAG 2 cut(s) 118, 136
BspLI GGNNCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 3 cut(s) 69, 173, 201
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 105, 123
BstDSI CCRYGG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 158
BsuRI GGCC 2 cut(s) 74, 133
BtgI CCRYGG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 198, 216
CviAII CATG 1 cut(s) 219
CviJI RGCY 8 cut(s) 30, 74, 104, 111, 117, 133, 172, 244
CviKI_1 RGCY 8 cut(s) 30, 74, 104, 111, 117, 133, 172, 244
CviQI GTAC 2 cut(s) 198, 216
DdeI CTNAG 2 cut(s) 105, 123
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 106, 113
Eco31I GGTCTC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 106, 113
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 222
FaiI YATR 1 cut(s) 220
FatI CATG 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 2 cut(s) 106, 113
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 2 cut(s) 74, 133
HapII CCGG 1 cut(s) 134
Hin1II CATG 1 cut(s) 222
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 4, 36
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 36, 86
Hpy99I CGWCG 2 cut(s) 26, 83
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 105, 123
Hsp92II CATG 1 cut(s) 222
LmnI GCTCC 2 cut(s) 116, 241
LpnPI CCDG 9 cut(s) 40, 74, 115, 127, 147, 159, 176, 186, 214
Lsp1109I GCAGC 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 2 cut(s) 149, 246
MhlI GDGCHC 2 cut(s) 106, 113
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 4 cut(s) 20, 43, 61, 132
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 243
RsaI GTAC 2 cut(s) 199, 217
RsaNI GTAC 2 cut(s) 198, 216
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 106, 113
SetI ASST 5 cut(s) 53, 63, 113, 119, 203
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SstI GAGCTC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 201
TaqII GACCGA 1 cut(s) 71
TatI WGTACW 1 cut(s) 215
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.